Gene detail

Detail information of GWHGAAZE013419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN07168.1	0	Protein NSP-INTERACTING KINASE 1 [Glycine soja]
Swissprot	tr\|Q9LFS4\|NIK1_ARATH	0	Protein NSP-INTERACTING KINASE 1 (Precursor)
trEMBL	tr\|I1KWN4\|I1KWN4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G28380.1}
TAIR10	AT5G16000.1	8E-142	NSP-interacting kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102400979	102404200	+
GWHAAZE00000003	mRNA	102400979	102404200	+
GWHAAZE00000003	exon	102400979	102401102	+
GWHAAZE00000003	exon	102401188	102401320	+
GWHAAZE00000003	exon	102401444	102401515	+
GWHAAZE00000003	exon	102401609	102401752	+
GWHAAZE00000003	exon	102401886	102401957	+
GWHAAZE00000003	exon	102402070	102402129	+
GWHAAZE00000003	exon	102402243	102402340	+
GWHAAZE00000003	exon	102402476	102402625	+
GWHAAZE00000003	exon	102402716	102403057	+
GWHAAZE00000003	exon	102403361	102403530	+
GWHAAZE00000003	exon	102403880	102404200	+
GWHAAZE00000003	five_prime_UTR	102400979	102400996	+
GWHAAZE00000003	CDS	102400997	102401102	+
GWHAAZE00000003	CDS	102401188	102401320	+
GWHAAZE00000003	CDS	102401444	102401515	+
GWHAAZE00000003	CDS	102401609	102401752	+
GWHAAZE00000003	CDS	102401886	102401957	+
GWHAAZE00000003	CDS	102402070	102402129	+
GWHAAZE00000003	CDS	102402243	102402340	+
GWHAAZE00000003	CDS	102402476	102402625	+
GWHAAZE00000003	CDS	102402716	102403057	+
GWHAAZE00000003	CDS	102403361	102403530	+
GWHAAZE00000003	CDS	102403880	102404200	+

Transcript Sequence
>GWHTAAZE013433 AAGATTACCTTTGATTCAATGGGGAAAAGAACAGAGGCGGCTACTCTGTTTTGTGTAGCTCTGTTCAGCTTATGGGCTTCTTCCACATCCGCTCTGCTCTCCCCAAAAGGCGTCAACTTCGAAGTGCAAGCTTTGATGAATATAAAATATTCTCTTACGGACCCTCATGGAGTTCTTGATAAGTGGGATGGAGACGCAGTCGATCCATGTAGCTGGACAATGGTTACTTGTTCATCTGAAAATCTGGTCACTGGCCTAGGAACTCCAAGCCAGAATTTGTCAGGTACTCTTTCGTCCAGCATCGGTAACTTAACAAATCTGCAGATTGTGCTATTACAGAACAATAACATATCAGGGACAATTCCCTCTGAGTTAGGGAGGCTTGAAAAACTTCGCACGCTTGATCTTTCTAACAACTTCTTTACTGGCGAAATTCCGCCTTCTCTAGCCCATTTGAAAAGCCTCCAATACTTGCGAATGAACAATAACAGTCTCTCTGGAGCAATTCCATTGTCATTGGCCAACATGACACAGCTTACCTTTTTAGACTTGTCTTTCAATAATTTGAGTGGTCCTGTACCCAGCTCTCTTGCTAAAACATTCAACGTTTTGGGGAACCCTATGATATGTGCAACCGGGAAAGAAAAAGACTGCAATGGAACAACGCCATTGCCACTGTCTCTCCCCTTCAATGATCAACAAAACACTCAACCTTCTGGAAGAACTAGAAATCAAAAAGTTGCCTTAGCTTTAGGGTCAAGTCTCGGTTGCATCTGCCTATTGATTCTTGGGTTTGGCTTCCTTCTCTGGCTGAGGCAAAAACACAATCAGCAAATATTCTTTGACATTGCCGATCAGTATCGCGAAGAAGTGTGCCTTGGGAACTTGAGAAGATTTCAGTTCCGAGAACTTCAGATTGCGACAAAGAACTTCAGCAGCAAGAACATACTAGGAAAGGGTGGTTTTGGAATCGTCTATAAAGGTTGCCTTCAAGATGGGACAGTCGTAGCTGTAAAAAGGTTGAGAGATGGAAATGCCATTGGTGGGGAAGTCCAATTCCAGACTGAAGTCGAGATGATCAGCCTAGCAGTTCACAGGAATCTCCTCCATCTATACGGGTTTTGCATGACAGCGACAGAGAGGCTTTTGGTGTACCCCTACATGTCCAATGGAAGCGTTGCTTCACGTCTCAAAGCGGTCCGGGGCACGGTGGGACATATAGCTCCGGAATATCTTTCTACAGGCCAGTCCTCAGAGAAAACAGACGTTTTCGGGTTTGGAATTCTTCTACTGGAACTTATCACTGGTCAGAGAGCTCTAGAATTCGGAAAGGCCGCGAACCAGAAAGGAGCTATGCTCGATTGGGTTAAGGAAATTCACCAGGAAAAGAAGCTTGACGTGCTAGTGGACAAGGACTTGAGAAACAGCTATGATAGAATTGAGCTCGAGGAAATGGTTCGGGTGGCTCTATTGTGCACCCAATACCTTCCGAGCCATAGGCCTAAGATGTCTGAAGTGGTTCGTATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCTCAAAGAGGCGAGGCGACTAGGTGTAGAGGAAATGAATTCTCCTCTTCAGAGCAATACTACGATTTTACAGACGACTCATTAGTGCTTGTTAAAGCAATGGAGCTCTCTGGACCAAGGTGA

Network for GWHGAAZE013419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	35	72	4.00E-12
PF00560.34	LRR_1	124	146	0.0015
PF07714.18	PK_Tyr_Ser-Thr	308	393	5.10E-12
PF07714.18	PK_Tyr_Ser-Thr	398	504	1.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.852
	SRR3591706	second leaf	3.720
	SRR3591707	mature leaf	3.898
	SRR3591708	Shoot apex	3.459
	SRR3591709	Stem	32.467
	SRR3591710	White floral bud	2.986
	SRR3591711	White flower	2.010
	SRR3591712	Green floral bud	1.561
	SRR3591713	Yellow flower	0.651
SRP173429	SRR8316895	Juvenile bud stage	2.653
	SRR8316896	Juvenile bud stage	1.806
	SRR8316897	Juvenile bud stage	0.448
	SRR8316894	Third green stage	0.767
	SRR8316900	Third green stage	1.718
	SRR8316901	Third green stage	1.554
	SRR8316898	Complete white stage	0.665
	SRR8316899	Complete white stage	6.345
	SRR8316903	Complete white stage	2.239
	SRR8316902	Silver flowering stage	0.515
	SRR8316904	Silver flowering stage	0.674
	SRR8316905	Silver flowering stage	0.303
	SRR8316906	Gold flowering stage	1.172
	SRR8316907	Gold flowering stage	0.520
	SRR8316908	Gold flowering stage	1.043
SRP132670	SRR6706286	Control	2.018
	SRR6706287	Light intensity 50%	1.899
	SRR6706288	Light intensity 20%	1.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.850
	CNS0095593	Slightly white alabastrum(diploid) 2	2.883
	CNS0095594	Slightly white alabastrum(diploid) 3	3.196
	CNS0095595	Whole white alabastrum(diploid) 2	3.322
	CNS0095596	Whole white alabastrum(diploid) 3	1.623
	CNS0095597	Whole white alabastrum(diploid) 4	2.747
	CNS0095598	Silvery flower (diploied) 1	4.016
	CNS0095599	Silvery flower (diploied) 2	5.236
	CNS0095600	Silvery flower (diploied) 3	4.545
	CNS0095601	Golden flower (diploid) 1	1.667
	CNS0095602	Golden flower (diploid) 2	2.525
	CNS0095603	Golden flower (diploid) 3	2.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.053
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.634
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.610
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.749
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.718
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.477
	CNS0095610	Silvery flower (tetraploid) 1	1.462
	CNS0095611	Silvery flower (tetraploid) 2	1.468
	CNS0095612	Silvery flower (tetraploid) 3	0.608
	CNS0095613	Golden flower (tetraploid) 1	0.443
	CNS0095614	Golden flower (tetraploid) 2	0.789
	CNS0095615	Golden flower (tetraploid) 3	0.704
CRA001975	CRR073297	Stem 1	2.396
	CRR073298	Stem 2	1.360
	CRR073299	Stem 3	2.508
	CRR073300	Leaf 1	1.715
	CRR073301	Leaf 2	2.065
	CRR073302	Leaf 3	1.538
	CRR073303	Juvenile bud 1	3.116
	CRR073304	Juvenile bud 2	1.133
	CRR073305	Juvenile bud 3	4.127
	CRR073306	Third green 1	0.146
	CRR073307	Third green 2	0.912
	CRR073308	Third green 3	0.677
	CRR073309	Second white 1	0.355
	CRR073310	Second white 2	0.097
	CRR073311	Second white 3	0.202
	CRR073312	Silver flowering 1	0.234
	CRR073313	Silver flowering 2	0.029
	CRR073314	Silver flowering 3	0.050
	CRR073315	Gold flowering 1	1.342
	CRR073316	Gold flowering 2	2.233
	CRR073317	Gold flowering 3	1.993
	CRR073318	Tawny withering 1	9.333
	CRR073319	Tawny withering 2	9.223
	CRR073320	Tawny withering 3	8.964