Gene detail

Detail information of GWHGAAZE013426

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010654221.1	PREDICTED: protein PHYLLO, chloroplastic isoform X1 [Vitis vinifera]
Swissprot	tr\|Q15KI9\|PHYLO_ARATH	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (Precursor)
trEMBL	tr\|A0A068TX34\|A0A068TX34_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00504.1}
TAIR10	AT1G68890.1	magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102495575	102527573	+
GWHAAZE00000003	mRNA	102495575	102527573	+
GWHAAZE00000003	exon	102495575	102495844	+
GWHAAZE00000003	exon	102495928	102496119	+
GWHAAZE00000003	exon	102496598	102496815	+
GWHAAZE00000003	exon	102502487	102502604	+
GWHAAZE00000003	exon	102502839	102502955	+
GWHAAZE00000003	exon	102503661	102503762	+
GWHAAZE00000003	exon	102504537	102504596	+
GWHAAZE00000003	exon	102504757	102504825	+
GWHAAZE00000003	exon	102505462	102505572	+
GWHAAZE00000003	exon	102505643	102505837	+
GWHAAZE00000003	exon	102506207	102506305	+
GWHAAZE00000003	exon	102507293	102507859	+
GWHAAZE00000003	exon	102507923	102508006	+
GWHAAZE00000003	exon	102508244	102508468	+
GWHAAZE00000003	exon	102508575	102508871	+
GWHAAZE00000003	exon	102513835	102513902	+
GWHAAZE00000003	exon	102517011	102517169	+
GWHAAZE00000003	exon	102517330	102517455	+
GWHAAZE00000003	exon	102517771	102517888	+
GWHAAZE00000003	exon	102519058	102519213	+
GWHAAZE00000003	exon	102519371	102519616	+
GWHAAZE00000003	exon	102519741	102519908	+
GWHAAZE00000003	exon	102520093	102520236	+
GWHAAZE00000003	exon	102524297	102524758	+
GWHAAZE00000003	exon	102524930	102525235	+
GWHAAZE00000003	exon	102525325	102525482	+
GWHAAZE00000003	exon	102525831	102525943	+
GWHAAZE00000003	exon	102527407	102527573	+
GWHAAZE00000003	CDS	102495575	102495844	+
GWHAAZE00000003	CDS	102495928	102496119	+
GWHAAZE00000003	CDS	102496598	102496815	+
GWHAAZE00000003	CDS	102502487	102502604	+
GWHAAZE00000003	CDS	102502839	102502955	+
GWHAAZE00000003	CDS	102503661	102503762	+
GWHAAZE00000003	CDS	102504537	102504596	+
GWHAAZE00000003	CDS	102504757	102504825	+
GWHAAZE00000003	CDS	102505462	102505572	+
GWHAAZE00000003	CDS	102505643	102505837	+
GWHAAZE00000003	CDS	102506207	102506305	+
GWHAAZE00000003	CDS	102507293	102507859	+
GWHAAZE00000003	CDS	102507923	102508006	+
GWHAAZE00000003	CDS	102508244	102508468	+
GWHAAZE00000003	CDS	102508575	102508871	+
GWHAAZE00000003	CDS	102513835	102513902	+
GWHAAZE00000003	CDS	102517011	102517169	+
GWHAAZE00000003	CDS	102517330	102517455	+
GWHAAZE00000003	CDS	102517771	102517888	+
GWHAAZE00000003	CDS	102519058	102519213	+
GWHAAZE00000003	CDS	102519371	102519616	+
GWHAAZE00000003	CDS	102519741	102519908	+
GWHAAZE00000003	CDS	102520093	102520236	+
GWHAAZE00000003	CDS	102524297	102524758	+
GWHAAZE00000003	CDS	102524930	102525235	+
GWHAAZE00000003	CDS	102525325	102525482	+
GWHAAZE00000003	CDS	102525831	102525943	+
GWHAAZE00000003	CDS	102527407	102527573	+

Transcript Sequence
>GWHTAAZE013440 ATGCACCAAACCCCCCCATCTACTCTACTATTCTCTATTACTGTCAGACATCGACTTCCAAAACCCCTTCCTTCCTTATGCTTCTCCTCGACTCCTCCATTGACGACCATGATTACTCTCAATACCGTAACTCTCTCTCCATTCCTTCAATTCCCACCCCAAATCTCTTCCCGTCGCACAACAACATTCACACTTCTCCGCACCCTATATCCTCTCGGAACTTCCCGGTCTTTTCCTCTCCTTCGCCCTCGTCCAAACCCTAATTGCACGGTTCTTCGTGATTCGATGATTGACGGTCCGGTACTGGAAGCCATGGATGCTGAATTACTTCTGGCAACCTGCATTACGCGTACTCTGCCACCTGCTTTGACTCTCCAGCATGGACTTGATGAGATTAAAGCGGCTGTTGAGCAGTTGAAGTCCAATCCTCCTTTTGCTACTAGTGGAATGTACAGATTTCAGGTTGCTGTCCCTCCAGGTGCAAAAGCTTTGAATTGGTTTTGCTGTCAACCAGAGGCATCAGAAGTGTTTCCTCAATTTTTTCTGTCTAAACACAATGATGACCCCACATATAAATCTCTTTTTCTCAATAGAACCTTTGGTATCTTTGGAATTGGGGCTGCACTCTGTGTCAAGGGTTTTTTTCCATGCACCTCGGCAGAGGAGATCACATTTAAAAGATGTCATTCGGTTGATTCAACACTTGTAGTGGCTTATGGTTTTGTGGGTATACATTCTGACATGATATCATCTTCTGTGGAGTTTGAGACTGCTTCATCTAACCTTATTATTCCTGTGATTGAGTTAGTCGAGTTTGAGGGTATTTCAATTTTAGCGGCAACACTTGTGTGGAATGACTCCTCCCTTTGTGTATTTGAGGAGGCAGTTCAAACTTACGAGTTATCTCTCTACCAGATCAGACATCATTTATGGCCTATCACTGAAGAATGCCGCAACACATGCATCAACTCTGCTCTCAGAAAGTTCAACATGGTGGAAGATAAAAGTGCCCGAGTGGTGTGCGTGAATGCTCTCTCAGAGGGTGGGATGGATCTTTGGGCTGACATTGTGGAACTGAAAGATGTTTCATGCTCCTGTCAGTTCTCTATCAGATTTTCACGTACTGTAGCAATTTCCAACAATATGTATCAGTTGGAAAATGTTGATGAAAGGAGTCACTCTATGCGAAATTATGGCAACATCAATACCTTGTGGGCATCACTTATAGTTGAAGAATGCTCTCGACTTGGGTTGACGTACTTTTGTGTAGCTCCAGGATCACGGTCGTCTCCCCTTGCCATTGCCGCTTCTAGTCATCCCCTTACAACTTGTATTGTGTGTTATGATGAACGGTCGCTTGCATTTCATGCCGTTGGTTATGCTCGAGGTTCTCATAAACCAGCAGTAGTTATAACATCGTCAGGCACTGCAGTTTCAAATCTTCTTCCAGCAGTTGTGGAGGCTAGTCAAGATTTTGTACCCCTTGTATTGCTCACAGCAGATCGTCCTCCAGAGCTGCATGATGCTGGTGCAAACCAAGCCATTAATCAGGTCAACCATTTTGGTTCATTTGTGAGGTACTTCTTCAATCTTCCTGCACCGACGGACGATATTCCTGCACGAATGGTCCTTACTACAATTGACTGTGCCATATACTGGGCTACCTCTTCGCCATGTGGTCCTGTTCATATCAATTGTTCTTTTAGGGAACTGTTAGAAGATAGTCCAAAAATGTGGACGGTGAACTGTTTAAAAGGATTAGAATTTTGGATGTCAGGTGCAGAACCATTTACAAACTATATCCAGATGCAGCATTCTTTTGCGTGTGATGAGTCTTTTGGCCATATGGCGGAGGTACTAAATGTGATTCAAGGGGCGAAACGTGGGCTTCTACTAATTGGTGCAATTCACAGTGAGGATGACACATGGGCAGCTCTTCTACTGGCTAAACACCTTCAATGGCCAGCTGTCGCTGATATCTTGTCTGGTTTACGTTTGAGAAAGCATATGACTTCATTTTCAGATATTGAAGAGAATTTTTTATTTGTTGATCATTTTGATCATTGTCTTCTCTCCAATGTAGTCAGGAATTGGGCTAAGGCTGATGTGATCATTCAGGCAACATCTGGAACATGGAAAGGATTAATGGAAGGAAACAAAAGTTATCTGGAATTTCATTTTTCTATTGTTTTGCTGGAGAAGATAGGGACCCGGATTACAAGCAAGCGCATATCACAGATGCTAGAAGATTGCTCTCCATGCTCATATATAGTGGTTGATAATCACCGAAGTCGTCATGATCCTTCACACATTGTAACACATAGGATCCAGAGTACCATTACTCAGTTCACTGATTGTGTGCTTAAGGCTTGCATACCGCAAAGAAGCACGAAATGGAATGGTTTTCTGCACACATTAGACAAGATGGTTGCCTGGGAAATAGCATTTCTAGTCCAATCAGAATACTCCTTGACTGAGCCTTATGTTGCACATGTAATTCTGGAATCTCTTAGCTGTGGATCTGCAATCTTTGTTGGGAACAGCATGCCAATACGTGATGCAGACATGTACGGATGCAAGTGGGCAAAATGTACTCATGGGATTGCTATGTTATCATCAGGATTACCTTGTCACTGGATTCAGGTGGCTGGTAATAGGGGAGCTAGTGGTATTGATGGTTTGCTTAGCACAGCTGTTGGTTTCGCTGTTGGATGCAACAAAAGAGTACTTTGTATTATTGGAGATGTTTCTTTTCTGCATGATACAAATGGATTGGCACTATTGAAACAAAGGGTGGCGCGGAAACAGATAACCATACTTGTAATAAACAATCACGGTGGTGCAATATTCAGTCTCCTTCCTATTGTGGCTAGTACTGAACAAAATGTACTAGATCAGTATTTCTACACATCTCATAATGTCTCAATCCACAATCTGTGTGGGGCACATGGTGTAAAGCATGTACAAGTTCAGACGAAAATGGAACTGCAAGATGCTTTATTCACAACTCAACAGGGAGAAGTTGATTGTGTCATAGAAGTTGAGAGTCGCATTGATACTAATGCAACTTTCCACAGAGTTCAGCTCTGTGCCCCACCTACTTCAGCTACGAACAATTATAAACTTACCACGTACTATAGAGAAGGCTTTGTTTTGACTCTGTCTCTTGAAGATGGAAGTGTTGGGTTTGGGGAGGTTGCACCTCTGGAAATCCACAAAGAAAACTTCCTCCAAGTCGAAGACCAGCTCCGGTTTCTTATTCATGTCATGGAAGGTGCTAATATTAGTTTATTCCTTCCTCTGCTGAAGGGTTCGTTTTCTTCTTGGATATTGAACAGTTTAGGAATCTCGCCAGGTTCAATCTTTCCAAGCGTCAGATGTGGTTTGGAGATGGCCATTCTCAATGCTATAGCAGCAGCAAAGGGTACCAGTTTACTGAACATACTTCATCCCCAGACAGATAACGAAGAAGAAATATCGGGAAAGCCTTCAAATGTTAAAATTTGTGCTCTTATTGACTGTAATGGAACTCCCGCAGAGGTGGCTTATGTTGCCACTTCACTTGTTAAAGAAGGGTTTACTGCAATTAAGCTAAAAGTAGCACGCCGGGCAGATCCCACTGAAGACGCTTCCGTCATACAAGAACTAAGAAAGCAGGTTGGGGAACAGATTGAACTACGTGCTGATGCAAATCGGAACTGGACCTATGAAGATGCAATTTTATTTGGTACTTGTGTGAAAGATTGTGGGCTGCAGTATATTGAGGAACCTGTTGCGAATGAGGATGATATAATTAAGTTCTGTGAAGAAACTGGCTTACCTGTAGCACTTGATGAAACCCTGAACTGTATTCAAGAGAATCCTCATGAAATGCTTGCAAGGTTCACTCACCCTGGCGTAGTTGCTGTTGTTATCAAACCAAGCGTTGTTGGGGGATTTGAAAATGCAGCATTGATTGCACGATGGGCTCAGCAACAAGGGAAGTTGACTGTTGTTAGTGCTGCATTTGAAAGTGGCCTTGGTTTGTCAGTTTATATTCAGTTTTCTCGCTATCTTGAGCTGCAAAATGCAGATATATGCAGAGTGATGAACAAGGAACCTGCATTTTCTGTAGCCCATGGTCTTGGAACCTACCGATGGTTTACAGAAGATGTAACCACTGAGCCCCTGAGTATTCGTCGTAACCCATGCAGTGGCTTTATGGAAGCGTCTGTTGTTGATGCCGGTCAACTCTTGCTAAACTTTCAAGTCAACCAAAATTCTATCATTCAGAATGTTACTGGGGGACAAGTTCTCAATTATCAGTTAACAATTGATTTAAAGGGTTTCTCCATTTCTATCAATGTTCAAGAGACTGGAGCTGATACCAACAAAAATGTCATTGTGTTTCTTCATGGTTTCCTTGGGACTGGTGAAGATTGGATTCCCATCATGAAGGCCGTCTCAGGGTCTGCAAGATGTATTGCGATCGACCTTCCTGGGCATGGGAGATCAAAGGTGCAAAACCAAAACCAGGTTGGTAATGGGCCAGCAGAAGAACCACCTTTGTCAATCGAGGTTATTGCTGAGATATTATGCAAGTTGTTTCATTTTATCACTCCCAAGAAAGTTACACTAGTTGGGTACTCGATGGGAGCAAGGATCACTTTGTACATGACCCTGAGATGCAGTGATAAGGTCAAAGGAGCTGTCGTAATATCTGGAAGCCCTGGATTGAAAGATGAGGTATCAAGAAAAATGCGCAGGGTTAAAGATGATTCCAGAGCATGCTTACTTGTCGCTCATGGCTTAGAGTTCTTTCTCAATGTCTGGTATGCTGGAGAGCTGTGGAATAGGGCATTGTGGGAGGACCTGAAGCACTGCAGTTTACCCCTTCTATTCGTTGTTGGAGAGAAAGATGAGAAGTTTAAAACGATTGCTATTCAAATGTCATCAGAAATTAGCCAGGATGCCTCTGCGGTCTCAAGCCCAGCAAGAACTCCTGCCATTCCTCGGCTTCCCCTTTCAAATTCAGCTCGAATTGGCTCCGCCTTCGCCACTGATTCTCCGCTCCGTATGTTTTCCAACTCTACAGAACTTGTATACTATCTTCTGAATTATACAGTCTGCACATGA

Network for GWHGAAZE013426

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02776.19	TPP_enzyme_N	407	569	6.90E-26
PF16582.6	TPP_enzyme_M_2	734	845	4.50E-10
PF02775.22	TPP_enzyme_C	888	1014	2.70E-08
PF13378.7	MR_MLE_C	1186	1368	8.00E-24
PF00561.21	Abhydrolase_1	1459	1569	1.40E-14

Protein Sequence

>GWHPAAZE013433
MHQTPPSTLLFSITVRHRLPKPLPSLCFSSTPPLTTMITLNTVTLSPFLQFPPQISSRRTTTFTLLRTLYPLGTSRSFPLLRPRPNPNCTVLRDSMIDGPVLEAMDAELLLATCITRTLPPALTLQHGLDEIKAAVEQLKSNPPFATSGMYRFQVAVPPGAKALNWFCCQPEASEVFPQFFLSKHNDDPTYKSLFLNRTFGIFGIGAALCVKGFFPCTSAEEITFKRCHSVDSTLVVAYGFVGIHSDMISSSVEFETASSNLIIPVIELVEFEGISILAATLVWNDSSLCVFEEAVQTYELSLYQIRHHLWPITEECRNTCINSALRKFNMVEDKSARVVCVNALSEGGMDLWADIVELKDVSCSCQFSIRFSRTVAISNNMYQLENVDERSHSMRNYGNINTLWASLIVEECSRLGLTYFCVAPGSRSSPLAIAASSHPLTTCIVCYDERSLAFHAVGYARGSHKPAVVITSSGTAVSNLLPAVVEASQDFVPLVLLTADRPPELHDAGANQAINQVNHFGSFVRYFFNLPAPTDDIPARMVLTTIDCAIYWATSSPCGPVHINCSFRELLEDSPKMWTVNCLKGLEFWMSGAEPFTNYIQMQHSFACDESFGHMAEVLNVIQGAKRGLLLIGAIHSEDDTWAALLLAKHLQWPAVADILSGLRLRKHMTSFSDIEENFLFVDHFDHCLLSNVVRNWAKADVIIQATSGTWKGLMEGNKSYLEFHFSIVLLEKIGTRITSKRISQMLEDCSPCSYIVVDNHRSRHDPSHIVTHRIQSTITQFTDCVLKACIPQRSTKWNGFLHTLDKMVAWEIAFLVQSEYSLTEPYVAHVILESLSCGSAIFVGNSMPIRDADMYGCKWAKCTHGIAMLSSGLPCHWIQVAGNRGASGIDGLLSTAVGFAVGCNKRVLCIIGDVSFLHDTNGLALLKQRVARKQITILVINNHGGAIFSLLPIVASTEQNVLDQYFYTSHNVSIHNLCGAHGVKHVQVQTKMELQDALFTTQQGEVDCVIEVESRIDTNATFHRVQLCAPPTSATNNYKLTTYYREGFVLTLSLEDGSVGFGEVAPLEIHKENFLQVEDQLRFLIHVMEGANISLFLPLLKGSFSSWILNSLGISPGSIFPSVRCGLEMAILNAIAAAKGTSLLNILHPQTDNEEEISGKPSNVKICALIDCNGTPAEVAYVATSLVKEGFTAIKLKVARRADPTEDASVIQELRKQVGEQIELRADANRNWTYEDAILFGTCVKDCGLQYIEEPVANEDDIIKFCEETGLPVALDETLNCIQENPHEMLARFTHPGVVAVVIKPSVVGGFENAALIARWAQQQGKLTVVSAAFESGLGLSVYIQFSRYLELQNADICRVMNKEPAFSVAHGLGTYRWFTEDVTTEPLSIRRNPCSGFMEASVVDAGQLLLNFQVNQNSIIQNVTGGQVLNYQLTIDLKGFSISINVQETGADTNKNVIVFLHGFLGTGEDWIPIMKAVSGSARCIAIDLPGHGRSKVQNQNQVGNGPAEEPPLSIEVIAEILCKLFHFITPKKVTLVGYSMGARITLYMTLRCSDKVKGAVVISGSPGLKDEVSRKMRRVKDDSRACLLVAHGLEFFLNVWYAGELWNRALWEDLKHCSLPLLFVVGEKDEKFKTIAIQMSSEISQDASAVSSPARTPAIPRLPLSNSARIGSAFATDSPLRMFSNSTELVYYLLNYTVCT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14759	PHYLLO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0009063	biological_process	cellular amino acid catabolic process
GO:0009234	biological_process	menaquinone biosynthetic process
GO:0030976	molecular_function	thiamine pyrophosphate binding
GO:0070204	molecular_function	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.453
	SRR3591706	second leaf	9.985
	SRR3591707	mature leaf	9.162
	SRR3591708	Shoot apex	16.044
	SRR3591709	Stem	6.858
	SRR3591710	White floral bud	6.382
	SRR3591711	White flower	7.532
	SRR3591712	Green floral bud	7.342
	SRR3591713	Yellow flower	5.448
SRP173429	SRR8316895	Juvenile bud stage	5.084
	SRR8316896	Juvenile bud stage	6.301
	SRR8316897	Juvenile bud stage	3.870
	SRR8316894	Third green stage	3.262
	SRR8316900	Third green stage	5.540
	SRR8316901	Third green stage	4.949
	SRR8316898	Complete white stage	1.280
	SRR8316899	Complete white stage	3.797
	SRR8316903	Complete white stage	3.625
	SRR8316902	Silver flowering stage	1.580
	SRR8316904	Silver flowering stage	3.371
	SRR8316905	Silver flowering stage	1.256
	SRR8316906	Gold flowering stage	3.911
	SRR8316907	Gold flowering stage	4.058
	SRR8316908	Gold flowering stage	3.665
SRP132670	SRR6706286	Control	5.351
	SRR6706287	Light intensity 50%	6.126
	SRR6706288	Light intensity 20%	6.395
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.553
	CNS0095593	Slightly white alabastrum(diploid) 2	2.733
	CNS0095594	Slightly white alabastrum(diploid) 3	3.255
	CNS0095595	Whole white alabastrum(diploid) 2	3.607
	CNS0095596	Whole white alabastrum(diploid) 3	2.200
	CNS0095597	Whole white alabastrum(diploid) 4	2.546
	CNS0095598	Silvery flower (diploied) 1	8.174
	CNS0095599	Silvery flower (diploied) 2	5.670
	CNS0095600	Silvery flower (diploied) 3	5.042
	CNS0095601	Golden flower (diploid) 1	4.788
	CNS0095602	Golden flower (diploid) 2	5.871
	CNS0095603	Golden flower (diploid) 3	5.599
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.838
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.247
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.345
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.861
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.052
	CNS0095610	Silvery flower (tetraploid) 1	5.343
	CNS0095611	Silvery flower (tetraploid) 2	6.597
	CNS0095612	Silvery flower (tetraploid) 3	4.820
	CNS0095613	Golden flower (tetraploid) 1	2.781
	CNS0095614	Golden flower (tetraploid) 2	4.001
	CNS0095615	Golden flower (tetraploid) 3	2.737
CRA001975	CRR073297	Stem 1	7.534
	CRR073298	Stem 2	6.215
	CRR073299	Stem 3	2.761
	CRR073300	Leaf 1	4.153
	CRR073301	Leaf 2	4.549
	CRR073302	Leaf 3	1.637
	CRR073303	Juvenile bud 1	2.401
	CRR073304	Juvenile bud 2	1.390
	CRR073305	Juvenile bud 3	2.780
	CRR073306	Third green 1	0.769
	CRR073307	Third green 2	0.456
	CRR073308	Third green 3	0.620
	CRR073309	Second white 1	1.127
	CRR073310	Second white 2	0.709
	CRR073311	Second white 3	1.051
	CRR073312	Silver flowering 1	0.859
	CRR073313	Silver flowering 2	0.780
	CRR073314	Silver flowering 3	0.523
	CRR073315	Gold flowering 1	1.707
	CRR073316	Gold flowering 2	4.893
	CRR073317	Gold flowering 3	0.986
	CRR073318	Tawny withering 1	1.478
	CRR073319	Tawny withering 2	2.877
	CRR073320	Tawny withering 3	1.504