Gene detail

Detail information of GWHGAAZE013457

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002512062.1	2.331E-153	6-phosphogluconolactonase, putative [Ricinus communis]
Swissprot	tr\|Q9LMX8\|6PGL1_ARATH	4E-126	Probable 6-phosphogluconolactonase 1
trEMBL	tr\|B9REC3\|B9REC3_RICCO	9E-154	6-phosphogluconolactonase, putative {ECO:0000313\|EMBL:EEF50731.1}
TAIR10	AT1G13700.1	3E-91	6-phosphogluconolactonase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102937204	102939361	-
GWHAAZE00000003	mRNA	102937204	102939361	-
GWHAAZE00000003	exon	102939189	102939361	-
GWHAAZE00000003	exon	102938954	102939089	-
GWHAAZE00000003	exon	102937204	102937704	-
GWHAAZE00000003	CDS	102939189	102939361	-
GWHAAZE00000003	CDS	102938954	102939089	-
GWHAAZE00000003	CDS	102937204	102937704	-

Transcript Sequence
>GWHTAAZE013471 ATGGCGCTTTTCAGACCTCGGGAAGTTAGAGAGGGTTTGAGGATTCACGAATGTTTGGATGAGCTTAGCACCGATTTGGCAGAATATGTAGCGGAACTTTCAGAGCTGTCAGTCAAAGAGCGCGGTGCTTTTGCCATTGCTTTATCCGGTGGTTCCCTCATTGGCTTGATGAGGAAACTTTTTGAAGCTCCATATAACAAGACTGTTGACTGGGGGAAGTGGTATATATTTTGGGCCGATGAACGCGTGGTGGCAAAAAATCATCTGGATAGCAACTATAAGCTAGCAAAGGATAATTTTTTATCCAAGGTACCAATAATTCCAGGTCGTGTACATTCCATAAACGACTCACTATCAGCAGAGGAAGCTGCAAGCGAGTACGAATTTGTCATCAGACAGTTTGTGAAGACACGTGTAGTCAGTGTATCCGAGGTCAGCGACTGCCCCAAATTTGACCTAATCCTTCTAGGTATGGGTCCTGACGGGCATATTGCCTCCCTGTTCCCTAACCACACTGCTCTTGACGAGAAAAATGCATGGGTAACATTTCTCACCGACTCACCCAAGCCCCCACCTGAGAGGATCACCTTTACTCTGCCCGTAATCAACTCTGCTTCCAACGTGGCTGTGGTTGTTACTGGAAGCAGTAAAGCTGATGCCGTACACTTGGTCGTTGATAAGGTGGGGCCAGACTGCCCAGCCTTGCCTGCAGGGCGGGTCCAGCCAGCTAAGGGGAAGTTGGTGTGGTTTTTGGACAAGCAGGCTGCCTCAAAGCTTGAGAGTTATCAATTTTCCGAGCAGGGCAAATAG

Network for GWHGAAZE013457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01182.21	Glucosamine_iso	20	249	4.70E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01057	PGLS, pgl, devB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0017057	molecular_function	6-phosphogluconolactonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.560
	SRR3591706	second leaf	18.065
	SRR3591707	mature leaf	33.304
	SRR3591708	Shoot apex	1.900
	SRR3591709	Stem	8.020
	SRR3591710	White floral bud	63.166
	SRR3591711	White flower	13.663
	SRR3591712	Green floral bud	41.641
	SRR3591713	Yellow flower	3.619
SRP173429	SRR8316895	Juvenile bud stage	12.193
	SRR8316896	Juvenile bud stage	13.537
	SRR8316897	Juvenile bud stage	7.574
	SRR8316894	Third green stage	4.565
	SRR8316900	Third green stage	17.183
	SRR8316901	Third green stage	19.775
	SRR8316898	Complete white stage	57.642
	SRR8316899	Complete white stage	113.703
	SRR8316903	Complete white stage	76.753
	SRR8316902	Silver flowering stage	31.342
	SRR8316904	Silver flowering stage	45.538
	SRR8316905	Silver flowering stage	16.337
	SRR8316906	Gold flowering stage	9.247
	SRR8316907	Gold flowering stage	24.407
	SRR8316908	Gold flowering stage	20.294
SRP132670	SRR6706286	Control	41.706
	SRR6706287	Light intensity 50%	43.451
	SRR6706288	Light intensity 20%	43.632
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.567
	CNS0095593	Slightly white alabastrum(diploid) 2	19.737
	CNS0095594	Slightly white alabastrum(diploid) 3	18.365
	CNS0095595	Whole white alabastrum(diploid) 2	13.933
	CNS0095596	Whole white alabastrum(diploid) 3	12.491
	CNS0095597	Whole white alabastrum(diploid) 4	22.042
	CNS0095598	Silvery flower (diploied) 1	21.522
	CNS0095599	Silvery flower (diploied) 2	17.963
	CNS0095600	Silvery flower (diploied) 3	36.524
	CNS0095601	Golden flower (diploid) 1	3.802
	CNS0095602	Golden flower (diploid) 2	12.294
	CNS0095603	Golden flower (diploid) 3	14.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.476
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.026
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.056
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.704
	CNS0095610	Silvery flower (tetraploid) 1	51.562
	CNS0095611	Silvery flower (tetraploid) 2	18.509
	CNS0095612	Silvery flower (tetraploid) 3	3.022
	CNS0095613	Golden flower (tetraploid) 1	12.038
	CNS0095614	Golden flower (tetraploid) 2	43.173
	CNS0095615	Golden flower (tetraploid) 3	11.758
CRA001975	CRR073297	Stem 1	12.720
	CRR073298	Stem 2	10.692
	CRR073299	Stem 3	12.466
	CRR073300	Leaf 1	20.285
	CRR073301	Leaf 2	17.070
	CRR073302	Leaf 3	18.611
	CRR073303	Juvenile bud 1	41.611
	CRR073304	Juvenile bud 2	38.161
	CRR073305	Juvenile bud 3	45.083
	CRR073306	Third green 1	50.819
	CRR073307	Third green 2	124.853
	CRR073308	Third green 3	71.099
	CRR073309	Second white 1	7.355
	CRR073310	Second white 2	6.504
	CRR073311	Second white 3	2.487
	CRR073312	Silver flowering 1	0.087
	CRR073313	Silver flowering 2	0.270
	CRR073314	Silver flowering 3	0.452
	CRR073315	Gold flowering 1	104.974
	CRR073316	Gold flowering 2	103.594
	CRR073317	Gold flowering 3	77.497
	CRR073318	Tawny withering 1	23.670
	CRR073319	Tawny withering 2	21.685
	CRR073320	Tawny withering 3	36.783