Detail information of GWHGAAZE013462


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00441.14.0766E-120unnamed protein product [Coffea canephora]
Swissprottr|Q9LMX5|AFP2_ARATH2E-71Ninja-family protein AFP2
trEMBLtr|A0A068TVZ8|A0A068TVZ8_COFCA2E-120Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00441.1}
TAIR10AT1G13740.12E-31ABI five binding protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene102981704102984205+
GWHAAZE00000003mRNA102981704102984205+
GWHAAZE00000003exon102981704102982406+
GWHAAZE00000003exon102983814102984205+
GWHAAZE00000003CDS102981704102982406+
GWHAAZE00000003CDS102983814102984205+
Transcript Sequence

Network for GWHGAAZE013462

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07897.12EAR57882.40E-14
PF16136.6NINJA_B1122301.50E-24
PF16135.6TDBD3233576.20E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.696
SRR3591706second leaf33.492
SRR3591707mature leaf57.495
SRR3591708Shoot apex43.740
SRR3591709Stem55.169
SRR3591710White floral bud34.188
SRR3591711White flower67.405
SRR3591712Green floral bud13.042
SRR3591713Yellow flower50.938
SRP173429 SRR8316895Juvenile bud stage 23.557
SRR8316896Juvenile bud stage 20.177
SRR8316897Juvenile bud stage 9.821
SRR8316894Third green stage 3.969
SRR8316900Third green stage 8.948
SRR8316901Third green stage 17.272
SRR8316898Complete white stage 7.494
SRR8316899Complete white stage 40.574
SRR8316903Complete white stage 11.317
SRR8316902Silver flowering stage19.159
SRR8316904Silver flowering stage13.399
SRR8316905Silver flowering stage8.869
SRR8316906Gold flowering stage 29.584
SRR8316907Gold flowering stage 31.831
SRR8316908Gold flowering stage 31.627
SRP132670SRR6706286Control18.239
SRR6706287Light intensity 50%16.164
SRR6706288Light intensity 20%13.503
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.979
CNS0095593Slightly white alabastrum(diploid) 219.817
CNS0095594Slightly white alabastrum(diploid) 322.806
CNS0095595Whole white alabastrum(diploid) 218.809
CNS0095596Whole white alabastrum(diploid) 33.697
CNS0095597Whole white alabastrum(diploid) 412.758
CNS0095598Silvery flower (diploied) 157.861
CNS0095599Silvery flower (diploied) 253.029
CNS0095600Silvery flower (diploied) 326.640
CNS0095601Golden flower (diploid) 156.651
CNS0095602Golden flower (diploid) 238.032
CNS0095603Golden flower (diploid) 338.912
CNS0095604Slightly white alabastrum(tetraploid) 19.957
CNS0095605Slightly white alabastrum(tetraploid) 27.633
CNS0095606Slightly white alabastrum(tetraploid) 323.219
CNS0095607Whole white alabastrum(tetraploid) 16.684
CNS0095608Whole white alabastrum(tetraploid) 23.347
CNS0095609Whole white alabastrum(tetraploid) 36.886
CNS0095610Silvery flower (tetraploid) 141.126
CNS0095611Silvery flower (tetraploid) 223.228
CNS0095612Silvery flower (tetraploid) 33.633
CNS0095613Golden flower (tetraploid) 115.738
CNS0095614Golden flower (tetraploid) 233.065
CNS0095615Golden flower (tetraploid) 320.924
CRA001975CRR073297Stem 120.600
CRR073298Stem 218.409
CRR073299Stem 316.235
CRR073300Leaf 115.969
CRR073301Leaf 230.054
CRR073302Leaf 36.111
CRR073303Juvenile bud 18.438
CRR073304Juvenile bud 29.207
CRR073305Juvenile bud 311.809
CRR073306Third green 154.499
CRR073307Third green 234.182
CRR073308Third green 338.469
CRR073309Second white 124.678
CRR073310Second white 232.050
CRR073311Second white 315.843
CRR073312Silver flowering 117.896
CRR073313Silver flowering 211.763
CRR073314Silver flowering 313.238
CRR073315Gold flowering 19.305
CRR073316Gold flowering 211.896
CRR073317Gold flowering 36.224
CRR073318Tawny withering 113.677
CRR073319Tawny withering 218.211
CRR073320Tawny withering 314.351