Detail information of GWHGAAZE013498


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGT40329.10cystathionine gamma synthase [Nicotiana attenuata]
Swissprottr|P55217|CGS1_ARATH0Cystathionine gamma-synthase 1, chloroplastic {ECO:0000305} (Precursor)
trEMBLtr|S5ZIN0|S5ZIN0_NICAT0Cystathionine gamma synthase {ECO:0000313|EMBL:AGT40329.1}
TAIR10AT3G01120.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene103434177103446489-
GWHAAZE00000003mRNA103434177103446489-
GWHAAZE00000003exon103434177103434618-
GWHAAZE00000003exon103440834103440952-
GWHAAZE00000003exon103441034103441249-
GWHAAZE00000003exon103441545103441652-
GWHAAZE00000003exon103441859103441945-
GWHAAZE00000003exon103443288103443491-
GWHAAZE00000003exon103443610103443669-
GWHAAZE00000003exon103444171103444339-
GWHAAZE00000003exon103444439103444512-
GWHAAZE00000003exon103444593103444696-
GWHAAZE00000003exon103446003103446489-
GWHAAZE00000003CDS103446003103446489-
GWHAAZE00000003CDS103444593103444696-
GWHAAZE00000003CDS103444439103444512-
GWHAAZE00000003CDS103444171103444339-
GWHAAZE00000003CDS103443610103443669-
GWHAAZE00000003CDS103443288103443491-
GWHAAZE00000003CDS103441859103441945-
GWHAAZE00000003CDS103441545103441652-
GWHAAZE00000003CDS103441034103441249-
GWHAAZE00000003CDS103440834103440952-
GWHAAZE00000003CDS103434495103434618-
GWHAAZE00000003three_prime_UTR103434177103434494-
Transcript Sequence

Network for GWHGAAZE013498

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01053.21Cys_Met_Meta_PP1584315.70E-88
PF01053.21Cys_Met_Meta_PP4715805.30E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01739metB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450

Gene Ontology

GO term OntologyName
GO:0019346biological_processtranssulfuration
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf265.791
SRR3591706second leaf199.464
SRR3591707mature leaf197.010
SRR3591708Shoot apex233.976
SRR3591709Stem476.051
SRR3591710White floral bud329.166
SRR3591711White flower267.169
SRR3591712Green floral bud253.709
SRR3591713Yellow flower346.597
SRP173429 SRR8316895Juvenile bud stage 132.101
SRR8316896Juvenile bud stage 176.728
SRR8316897Juvenile bud stage 78.177
SRR8316894Third green stage 74.496
SRR8316900Third green stage 259.828
SRR8316901Third green stage 245.908
SRR8316898Complete white stage 181.378
SRR8316899Complete white stage 305.107
SRR8316903Complete white stage 228.392
SRR8316902Silver flowering stage187.042
SRR8316904Silver flowering stage236.605
SRR8316905Silver flowering stage128.637
SRR8316906Gold flowering stage 447.143
SRR8316907Gold flowering stage 428.302
SRR8316908Gold flowering stage 490.353
SRP132670SRR6706286Control258.103
SRR6706287Light intensity 50%284.187
SRR6706288Light intensity 20%296.544
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1158.047
CNS0095593Slightly white alabastrum(diploid) 2186.105
CNS0095594Slightly white alabastrum(diploid) 3154.828
CNS0095595Whole white alabastrum(diploid) 2165.567
CNS0095596Whole white alabastrum(diploid) 3163.844
CNS0095597Whole white alabastrum(diploid) 4142.179
CNS0095598Silvery flower (diploied) 1203.928
CNS0095599Silvery flower (diploied) 2206.289
CNS0095600Silvery flower (diploied) 3350.561
CNS0095601Golden flower (diploid) 1205.024
CNS0095602Golden flower (diploid) 2366.950
CNS0095603Golden flower (diploid) 3342.997
CNS0095604Slightly white alabastrum(tetraploid) 1193.005
CNS0095605Slightly white alabastrum(tetraploid) 2167.410
CNS0095606Slightly white alabastrum(tetraploid) 3367.935
CNS0095607Whole white alabastrum(tetraploid) 1125.140
CNS0095608Whole white alabastrum(tetraploid) 2117.871
CNS0095609Whole white alabastrum(tetraploid) 3241.146
CNS0095610Silvery flower (tetraploid) 1208.384
CNS0095611Silvery flower (tetraploid) 2197.388
CNS0095612Silvery flower (tetraploid) 3215.030
CNS0095613Golden flower (tetraploid) 1188.477
CNS0095614Golden flower (tetraploid) 2219.682
CNS0095615Golden flower (tetraploid) 3172.134
CRA001975CRR073297Stem 1188.029
CRR073298Stem 2180.039
CRR073299Stem 3215.518
CRR073300Leaf 1226.255
CRR073301Leaf 2214.751
CRR073302Leaf 3243.825
CRR073303Juvenile bud 1249.532
CRR073304Juvenile bud 2271.741
CRR073305Juvenile bud 3267.267
CRR073306Third green 1507.687
CRR073307Third green 2348.820
CRR073308Third green 3384.208
CRR073309Second white 1421.636
CRR073310Second white 2269.658
CRR073311Second white 3250.451
CRR073312Silver flowering 1318.313
CRR073313Silver flowering 2406.639
CRR073314Silver flowering 3306.236
CRR073315Gold flowering 1105.569
CRR073316Gold flowering 2126.390
CRR073317Gold flowering 3147.668
CRR073318Tawny withering 1217.879
CRR073319Tawny withering 2180.390
CRR073320Tawny withering 3223.226