Gene detail

Detail information of GWHGAAZE013510

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271162.1	7.0174E-132	PREDICTED: uncharacterized protein LOC100247222 [Vitis vinifera]
trEMBL	tr\|F6HGB3\|F6HGB3_VITVI	1E-132	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51306.1}
TAIR10	AT2G03050.1	4E-75	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	103619672	103620562	+
GWHAAZE00000003	mRNA	103619672	103620562	+
GWHAAZE00000003	exon	103619672	103620562	+
GWHAAZE00000003	CDS	103619672	103620562	+

Transcript Sequence
>GWHTAAZE013524 ATGATAATTAGACTACAACCCTTCCCACAAAATCTCTTCTCCCCCTCAACCATCAACTCCTCCGCCAACTCAAACCCTAAATCCACTCGCAAAACTTTCCATCGCGTTAAAGTCACTGCCCGACCCCCACCTCCCTCCACTGATTCTGGCCTCCGATTCCATGAAAAACTCGAATACCTAGAAAACCTACAGGTCAATACCACTAAAGCCCTAGAAAAGAACCCCCATTTCCGCTCCACCCCACTCTCCACCCTCAAATCCGTCGAAAGATGCCTTTCCTCCATGGGAATCGAACGCTCTGCTTTCGGCCGTATTTTCGATATGCACCCTCAGCTCCTCACTTGCGATCCGTACACCCACCTTTACCCGGTATTCGATTTCTTGCTAAACGATGTTAATATCCCCTTTCCTGATATTCGTAATTCCATCGTTCGGTGTCCCAGATTGTTAATTTGCAGCGTAGATGATCAATTGAAACCCACATTGCGCTTCCTGAGGGAATTAGGGTTTGTGGGGTCGAATGCGATTACTTCACAGACGACTGTCTTGTTGGTTTCGAGTGTTGAAGGTACCCTCTTGCCCAAATTGAACTATTTGATGAATTTAGGGTTTGAGTTTGATGACGTTGTTATGATGGTGTTGAGGTCACCTGGGTTATTGACTTTTAGTATAGAGAACAATTTTAAGCCCAAAGTGGAGTATTTTGTCAAGGAGATGAATGGGGATTTGGCAGAATTGAAGAAATTTCCCCAGTATTTCTCTTTTAGTTTGGAGGATAAGATAAAGCACAGGCATAGGCATTTGGCTCAGTATGGAATCTCTCTTCCATTGCCAGATATGTTGAAGGTTAGCGAACAAAAGTTCAAGGCTCTTGTAACGGATATGTTGTAA

Network for GWHGAAZE013510

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	53	165	5.30E-07
PF02536.15	mTERF	134	289	2.60E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.201
	SRR3591706	second leaf	17.010
	SRR3591707	mature leaf	18.090
	SRR3591708	Shoot apex	22.126
	SRR3591709	Stem	7.616
	SRR3591710	White floral bud	8.018
	SRR3591711	White flower	10.225
	SRR3591712	Green floral bud	9.211
	SRR3591713	Yellow flower	8.944
SRP173429	SRR8316895	Juvenile bud stage	6.350
	SRR8316896	Juvenile bud stage	9.360
	SRR8316897	Juvenile bud stage	4.127
	SRR8316894	Third green stage	3.893
	SRR8316900	Third green stage	8.119
	SRR8316901	Third green stage	7.708
	SRR8316898	Complete white stage	3.880
	SRR8316899	Complete white stage	7.999
	SRR8316903	Complete white stage	5.491
	SRR8316902	Silver flowering stage	2.913
	SRR8316904	Silver flowering stage	7.157
	SRR8316905	Silver flowering stage	3.357
	SRR8316906	Gold flowering stage	10.788
	SRR8316907	Gold flowering stage	6.829
	SRR8316908	Gold flowering stage	9.531
SRP132670	SRR6706286	Control	9.368
	SRR6706287	Light intensity 50%	5.822
	SRR6706288	Light intensity 20%	8.971
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.521
	CNS0095593	Slightly white alabastrum(diploid) 2	5.749
	CNS0095594	Slightly white alabastrum(diploid) 3	7.399
	CNS0095595	Whole white alabastrum(diploid) 2	8.203
	CNS0095596	Whole white alabastrum(diploid) 3	5.532
	CNS0095597	Whole white alabastrum(diploid) 4	7.230
	CNS0095598	Silvery flower (diploied) 1	9.844
	CNS0095599	Silvery flower (diploied) 2	8.699
	CNS0095600	Silvery flower (diploied) 3	11.835
	CNS0095601	Golden flower (diploid) 1	14.578
	CNS0095602	Golden flower (diploid) 2	16.252
	CNS0095603	Golden flower (diploid) 3	12.537
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.729
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.722
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.980
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.248
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.665
	CNS0095610	Silvery flower (tetraploid) 1	11.567
	CNS0095611	Silvery flower (tetraploid) 2	13.443
	CNS0095612	Silvery flower (tetraploid) 3	10.784
	CNS0095613	Golden flower (tetraploid) 1	8.699
	CNS0095614	Golden flower (tetraploid) 2	12.371
	CNS0095615	Golden flower (tetraploid) 3	18.154
CRA001975	CRR073297	Stem 1	17.284
	CRR073298	Stem 2	20.604
	CRR073299	Stem 3	21.555
	CRR073300	Leaf 1	10.982
	CRR073301	Leaf 2	12.762
	CRR073302	Leaf 3	11.428
	CRR073303	Juvenile bud 1	8.875
	CRR073304	Juvenile bud 2	7.799
	CRR073305	Juvenile bud 3	9.690
	CRR073306	Third green 1	4.777
	CRR073307	Third green 2	4.497
	CRR073308	Third green 3	5.480
	CRR073309	Second white 1	7.065
	CRR073310	Second white 2	4.112
	CRR073311	Second white 3	7.657
	CRR073312	Silver flowering 1	5.658
	CRR073313	Silver flowering 2	4.292
	CRR073314	Silver flowering 3	4.168
	CRR073315	Gold flowering 1	38.063
	CRR073316	Gold flowering 2	42.053
	CRR073317	Gold flowering 3	46.970
	CRR073318	Tawny withering 1	13.818
	CRR073319	Tawny withering 2	8.151
	CRR073320	Tawny withering 3	9.251