Gene detail

Detail information of GWHGAAZE013511

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG19063.1	1.0569E-111	Transcription factor MYB44 -like protein [Gossypium arboreum]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	8E-37	Transcription factor MYB44
trEMBL	tr\|F6HPQ3\|F6HPQ3_VITVI	3E-111	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56534.1}
TAIR10	AT1G69560.1	6E-63	myb domain protein 105

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	103643143	103645012	+
GWHAAZE00000003	mRNA	103643143	103645012	+
GWHAAZE00000003	exon	103643143	103643533	+
GWHAAZE00000003	exon	103643649	103644011	+
GWHAAZE00000003	exon	103644684	103645012	+
GWHAAZE00000003	CDS	103643143	103643533	+
GWHAAZE00000003	CDS	103643649	103644011	+
GWHAAZE00000003	CDS	103644684	103645012	+

Transcript Sequence
>GWHTAAZE013525 ATGGGAACGGTTTTTGCAAACATGGGTTCTCTCTCTATCAACCCAAACATCTATGGGTTACAATCAGCCGTGTCTTCTTCACGGGAGAGTTACTGTGTGGCCTACAGAAGCCTTGAGGAGGAAAGCAAGAACGGCCATCGTCATGATATGGGTGAGGAGCAGGGGAAGGGCTCTGCCTCTGATTTCAGTGATGAGTTGACCATTGATCTCAATGCCACCTTAAACGAAGAAAAATCAACCAACCTTGATCAAGTCAACAACAATGGCCAGTCAAAGCTTTGTGCTAGAGGCCATTGGAGGCCTGCTGAAGATACAAAGCTCAAGGAACTTGTTGCCCTTTATGGCCCCCAAAATTGGAACCTTATAGCAGAGAAACTGGAAGGAAGATCAGGGAAGAGTTGTAGGTTGAGATGGTTTAACCAACTGGATCCGAGAATAAATAGGAGAGCATTTAGTGAAGAAGAGGAGGAGAGGCTAATGGCAGCTCATAGACTATATGGTAACAAGTGGGCCTTGATTGCAAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAACCATTGGCATGTTATTATGGCAAGAAAGTATAGGGAACATTCCAGTGCTTATAGGAGGAGAAAAATGGCTCAATCTACTACTAATTACAATTCAACAAGAATGTTGGAGGAAAGCAGAGATATTATTAACACTCTTAAACCAGAAGGAACAGCATTTGTAGGATCATCATCATCATCACCCCACAGCATCACTGGTCCAAAGGGCAATGAGATGATGAGTATACTGAGGGAGGACAGGTCTTGGGATATGGCAAGGGAAGAATCAAACAATAACAACATGTCTTATTTTAATCCCCACAATTACATTAATAATCCGCCACCATTGATGCAACAACACTACTCACACTACAACTACCCATTGAGCTCATCAGACTTTAGAGAATCAACAGCAACACCGCCACAAGCTTATGGGAAAGAAGCCAAGTCATCACCTGTTGTTACAGTGGACATAGTAGGGGGACAGAGAGAGATTATTACACCACCATTTATAGACTTTCTTGGGGTAGGAGCCACATCAAGTTAA

Network for GWHGAAZE013511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	96	141	8.30E-15
PF00249.32	Myb_DNA-binding	148	191	2.60E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.906
	SRR3591706	second leaf	0.466
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	6.081
	SRR3591709	Stem	1.986
	SRR3591710	White floral bud	1.056
	SRR3591711	White flower	0.728
	SRR3591712	Green floral bud	0.130
	SRR3591713	Yellow flower	0.088
SRP173429	SRR8316895	Juvenile bud stage	0.560
	SRR8316896	Juvenile bud stage	0.209
	SRR8316897	Juvenile bud stage	0.189
	SRR8316894	Third green stage	0.363
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.128
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.409
	SRR8316903	Complete white stage	0.071
	SRR8316902	Silver flowering stage	0.073
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.055
SRP132670	SRR6706286	Control	0.063
	SRR6706287	Light intensity 50%	0.153
	SRR6706288	Light intensity 20%	0.188
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.106
	CNS0095593	Slightly white alabastrum(diploid) 2	0.772
	CNS0095594	Slightly white alabastrum(diploid) 3	0.914
	CNS0095595	Whole white alabastrum(diploid) 2	0.484
	CNS0095596	Whole white alabastrum(diploid) 3	0.331
	CNS0095597	Whole white alabastrum(diploid) 4	0.192
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.850
	CNS0095600	Silvery flower (diploied) 3	0.368
	CNS0095601	Golden flower (diploid) 1	0.456
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.281
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.242
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.141
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.545
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.210
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.410
	CNS0095610	Silvery flower (tetraploid) 1	0.277
	CNS0095611	Silvery flower (tetraploid) 2	0.932
	CNS0095612	Silvery flower (tetraploid) 3	0.420
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.238
	CNS0095615	Golden flower (tetraploid) 3	0.134
CRA001975	CRR073297	Stem 1	0.934
	CRR073298	Stem 2	0.380
	CRR073299	Stem 3	3.199
	CRR073300	Leaf 1	0.340
	CRR073301	Leaf 2	0.084
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.025
	CRR073305	Juvenile bud 3	0.414
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.372
	CRR073308	Third green 3	0.287
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000