Gene detail

Detail information of GWHGAAZE013513

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269461.2	2.2858E-177	PREDICTED: cyclic dof factor 2 [Vitis vinifera]
Swissprot	tr\|Q8LFV3\|CDF3_ARATH	8E-97	Cyclic dof factor 3
trEMBL	tr\|F6HPQ5\|F6HPQ5_VITVI	9E-178	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56536.1}
TAIR10	AT3G47500.1	1E-75	cycling DOF factor 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	103672366	103675471	-
GWHAAZE00000003	mRNA	103672366	103675471	-
GWHAAZE00000003	exon	103675328	103675471	-
GWHAAZE00000003	exon	103672366	103674007	-
GWHAAZE00000003	five_prime_UTR	103675466	103675471	-
GWHAAZE00000003	CDS	103675328	103675465	-
GWHAAZE00000003	CDS	103672751	103674007	-
GWHAAZE00000003	three_prime_UTR	103672366	103672750	-

Transcript Sequence
>GWHTAAZE013527 ACAGAAATGTCGGAAGTAAAAGATCCCGCGATTAAGTTGTTTGGGAAGACAATTCAATTGCTGCCAGATGAGGCGGCCACAGCAAATATTACTGCGCTTCTTCAACAAAACTCCTCCACCGCTACATCTTTGCATGAAAACAAGAAACGTTCAGCAGGTGGAGAACTCAAGGAAACCAAACAAGTAGAAGAATTGACATGCTCGGCAACATCATCCGGGGTAAGTGAGGACCCTAAAACACCTGGTGCCGAAAAGGAAACTCCTTCGCCAAACAGTACTAACAAGAATGAAGATCCAAATGAAACCAGTAGTACATCAGAAGAAAAAACCCTAAAGAAACCCGACAAAATACTCCCATGTCCACGATGCAATAGTATGGACACCAAGTTCTGTTACTACAACAATTACAATGTGAACCAGCCTCGCCATTTTTGCAAGAACTGTCAAAGATACTGGACAGCCGGTGGAAGTATGAGAAACGTGCCTGTTGGCTCTGGTCGCCGCAAGAACAAAAGCGCACCCGCTTCCCATTTCCGTCACATAATGGTTTCTGAAGCTCTCCAAGCTGTTCGAGCCGATGCTGCCACCAATAGGATCCACCACCCAACTTTATCGCCCAACGGCACTGTCCTTGCCTTTGGCTCAGACGAGCCCCTTTGTGAATCTATGGCTTCTGCATTGAACCTTGCTGATAAGTCACAGAATTGTGATGCAAATGAATTTCACGGACATGAACAAAGAAACACGGTTCCTTGTGGAGGGAGAGAAAATGGGGACGATCACTCAAGCAGGTCTACTAGTGCGCTTTCAAATCAGACAGAGAAGGGGAACAATAGTGTTTTAAATGAGTCGGTTTTGAAGAACTTTCAGGGCTCTCCTCCACAACTGCCGTGCTTCCCTACACCACCTTGGCCTAGTCCATGGACTCCAATGCCACAACCATCGGCTTTTGGTCCTTCAAGCTTTCCTGTATCATTTTACCCTGTGCCACAATATTGGGGTTACACTGTACCTAACCCATGGAACATGCCATTGTTGCCTCCACAGCCTTGTTTATCAGATCACTCGACCATTAGCTTAAATCCTAATTCTCCAACATTGGGAAAACATTCTAGGGATGGGCAAAGGCTTCAATCATCAAACTCGGGGAAAGAAGAAGAGGGCGTTCTGATTCCAAAGACTTTGAGGATCAATGATCCGAATGAAGCTGCTAAAAGCTCGATATGGTCAACACTAGGGATTGAGAACGAGAATATTAGTGATTCGAGTGGTGGGACAAGTCTATTTAAGGCCTTTCAACGAAAGGGCAATGAGAAGAATCACACTGCTGAAACGTCTCTGGTTTTGCAAGCCAATCCTGCAGCCTTATCGCGGTCACTTAACTTCCATGAGACCTCGTAGAGAGGGTTGAATTTTTCTTTGTAATCTTTTTATGGTGACAAAGCCCAAAATGTTGCATGGAAAGAGCACGGGGGATTGCTGCTTACAAGCCTTAATGCAGGAATTAAATGGTGAAATGATCCAACTTTGAAGAAGATGAGACAGTTTTCTTTGTTTGAGAGAGGAGCCGCATCGTATTCGTCTCAATTAGCCGCTCTGCTCCTCTTTATCTTTCTTTGTAATAGTAAATTAGATGGTTTGCCTGCTAGTATTATTGAACATAGCTATATACAAGATGTATGCATAGAGAGAGAAAAGGTGGGGGGGAAGGAGATTCTTGAATGTGCCCATATATGTGCAAATGCTGTTAAATAAGTTATGAATCTAAATCAGGAATTTCTTGCAA

Network for GWHGAAZE013513

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	113	170	2.80E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.510
	SRR3591706	second leaf	16.880
	SRR3591707	mature leaf	27.912
	SRR3591708	Shoot apex	16.488
	SRR3591709	Stem	18.273
	SRR3591710	White floral bud	17.488
	SRR3591711	White flower	20.014
	SRR3591712	Green floral bud	12.237
	SRR3591713	Yellow flower	7.695
SRP173429	SRR8316895	Juvenile bud stage	5.078
	SRR8316896	Juvenile bud stage	7.909
	SRR8316897	Juvenile bud stage	2.211
	SRR8316894	Third green stage	5.577
	SRR8316900	Third green stage	9.098
	SRR8316901	Third green stage	8.911
	SRR8316898	Complete white stage	3.064
	SRR8316899	Complete white stage	15.856
	SRR8316903	Complete white stage	8.734
	SRR8316902	Silver flowering stage	4.629
	SRR8316904	Silver flowering stage	5.534
	SRR8316905	Silver flowering stage	2.042
	SRR8316906	Gold flowering stage	8.893
	SRR8316907	Gold flowering stage	8.640
	SRR8316908	Gold flowering stage	10.192
SRP132670	SRR6706286	Control	19.450
	SRR6706287	Light intensity 50%	15.754
	SRR6706288	Light intensity 20%	16.196
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.345
	CNS0095593	Slightly white alabastrum(diploid) 2	10.067
	CNS0095594	Slightly white alabastrum(diploid) 3	12.268
	CNS0095595	Whole white alabastrum(diploid) 2	11.890
	CNS0095596	Whole white alabastrum(diploid) 3	8.772
	CNS0095597	Whole white alabastrum(diploid) 4	9.905
	CNS0095598	Silvery flower (diploied) 1	8.207
	CNS0095599	Silvery flower (diploied) 2	3.759
	CNS0095600	Silvery flower (diploied) 3	5.051
	CNS0095601	Golden flower (diploid) 1	6.571
	CNS0095602	Golden flower (diploid) 2	6.784
	CNS0095603	Golden flower (diploid) 3	6.724
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.681
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.241
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.732
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.618
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.898
	CNS0095610	Silvery flower (tetraploid) 1	7.961
	CNS0095611	Silvery flower (tetraploid) 2	6.096
	CNS0095612	Silvery flower (tetraploid) 3	0.721
	CNS0095613	Golden flower (tetraploid) 1	3.243
	CNS0095614	Golden flower (tetraploid) 2	7.521
	CNS0095615	Golden flower (tetraploid) 3	15.803
CRA001975	CRR073297	Stem 1	10.973
	CRR073298	Stem 2	11.238
	CRR073299	Stem 3	12.830
	CRR073300	Leaf 1	15.163
	CRR073301	Leaf 2	13.620
	CRR073302	Leaf 3	7.986
	CRR073303	Juvenile bud 1	18.742
	CRR073304	Juvenile bud 2	9.295
	CRR073305	Juvenile bud 3	23.885
	CRR073306	Third green 1	103.470
	CRR073307	Third green 2	73.987
	CRR073308	Third green 3	100.817
	CRR073309	Second white 1	26.334
	CRR073310	Second white 2	31.230
	CRR073311	Second white 3	27.736
	CRR073312	Silver flowering 1	11.383
	CRR073313	Silver flowering 2	7.801
	CRR073314	Silver flowering 3	9.272
	CRR073315	Gold flowering 1	1.960
	CRR073316	Gold flowering 2	2.033
	CRR073317	Gold flowering 3	1.718
	CRR073318	Tawny withering 1	2.626
	CRR073319	Tawny withering 2	2.568
	CRR073320	Tawny withering 3	2.899