Detail information of GWHGAAZE013516


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011075635.11.6896E-179PREDICTED: vacuolar amino acid transporter 1-like [Sesamum indicum]
Swissprottr|Q9FKS8|LHT1_ARATH2E-13Lysine histidine transporter 1
trEMBLtr|D7TN79|D7TN79_VITVI3E-177Putative uncharacterized protein {ECO:0000313|EMBL:CBI31952.3}
TAIR10AT3G28960.12E-103Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene103727135103728588-
GWHAAZE00000003mRNA103727135103728588-
GWHAAZE00000003exon103727135103727656-
GWHAAZE00000003exon103728097103728588-
GWHAAZE00000003CDS103728097103728588-
GWHAAZE00000003CDS103727135103727656-
Transcript Sequence

Network for GWHGAAZE013516

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01490.19Aa_trans33258.10E-49
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K15015SLC32A, VGAT GABAergic synapse map04727
Retrograde endocannabinoid signalingmap04723
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.286
SRR3591706second leaf1.045
SRR3591707mature leaf0.398
SRR3591708Shoot apex4.172
SRR3591709Stem31.790
SRR3591710White floral bud1.482
SRR3591711White flower2.153
SRR3591712Green floral bud0.271
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.146
SRR8316896Juvenile bud stage 0.026
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.239
SRR8316900Third green stage 1.246
SRR8316901Third green stage 0.901
SRR8316898Complete white stage 3.048
SRR8316899Complete white stage 4.961
SRR8316903Complete white stage 4.696
SRR8316902Silver flowering stage7.635
SRR8316904Silver flowering stage7.958
SRR8316905Silver flowering stage0.114
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 6.451
SRR8316908Gold flowering stage 0.139
SRP132670SRR6706286Control1.048
SRR6706287Light intensity 50%0.773
SRR6706288Light intensity 20%0.723
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.038
CNS0095593Slightly white alabastrum(diploid) 20.384
CNS0095594Slightly white alabastrum(diploid) 30.042
CNS0095595Whole white alabastrum(diploid) 20.511
CNS0095596Whole white alabastrum(diploid) 30.029
CNS0095597Whole white alabastrum(diploid) 40.073
CNS0095598Silvery flower (diploied) 10.434
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 31.855
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 21.972
CNS0095603Golden flower (diploid) 32.183
CNS0095604Slightly white alabastrum(tetraploid) 10.478
CNS0095605Slightly white alabastrum(tetraploid) 20.150
CNS0095606Slightly white alabastrum(tetraploid) 31.764
CNS0095607Whole white alabastrum(tetraploid) 10.160
CNS0095608Whole white alabastrum(tetraploid) 20.105
CNS0095609Whole white alabastrum(tetraploid) 30.062
CNS0095610Silvery flower (tetraploid) 10.832
CNS0095611Silvery flower (tetraploid) 20.482
CNS0095612Silvery flower (tetraploid) 30.171
CNS0095613Golden flower (tetraploid) 10.023
CNS0095614Golden flower (tetraploid) 20.291
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.089
CRR073298Stem 20.117
CRR073299Stem 30.154
CRR073300Leaf 10.273
CRR073301Leaf 20.522
CRR073302Leaf 30.696
CRR073303Juvenile bud 10.644
CRR073304Juvenile bud 21.244
CRR073305Juvenile bud 31.339
CRR073306Third green 10.914
CRR073307Third green 21.955
CRR073308Third green 32.878
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.006
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.045
CRR073316Gold flowering 20.310
CRR073317Gold flowering 30.370
CRR073318Tawny withering 10.522
CRR073319Tawny withering 20.043
CRR073320Tawny withering 30.231