Gene detail

Detail information of GWHGAAZE013537

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276889.1	1.9649E-113	PREDICTED: homeobox-leucine zipper protein ATHB-13 [Vitis vinifera]
Swissprot	tr\|Q8LC03\|ATB13_ARATH	2E-97	Homeobox-leucine zipper protein ATHB-13
trEMBL	tr\|F6HPE2\|F6HPE2_VITVI	7E-114	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56570.1}
TAIR10	AT1G69780.1	1E-68	Homeobox-leucine zipper protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104069245	104070547	+
GWHAAZE00000003	mRNA	104069245	104070547	+
GWHAAZE00000003	exon	104069245	104069607	+
GWHAAZE00000003	exon	104070179	104070547	+
GWHAAZE00000003	CDS	104069245	104069607	+
GWHAAZE00000003	CDS	104070179	104070547	+

Transcript Sequence
>GWHTAAZE013551 ATGTCATTTACAGGTGTAAATGATGTTTATCATGAAGAAACAAATAACAACGGGGAAGAAGAATTATCAGAGGACGAAGGGTCACAAGCAGGGGAAAAGAAGAGAAGGCTTAACATGGAACAAGTGAGGACACTTGAGAAGAACTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCTAGGGCCCTTGGCCTACAACCCAGGCAGATTGCTATTTGGTTCCAAAACAGGAGAGCTAGATGGAAGACAAAACAATTGGAAAAAGACTATGATGTCCTCAAGAGACAATTTGATGCCATCAAAGCTGAAAATGAAGCACTCCATTCTCACAACCAAAAACTTCAATCCCAGATAACGGCACTGAAAAACAGGGAGCCAACAGAGTCGACATTCAACCTCAACGTAAAAGAAACAGAGGGGTCTAGCAGTAATAGAAGTGAAAACAGCTCAGATATAAAGCTTGATATCTCAATGACACCGCCACCAATTGACAGCCCTTCTCTCTCAACCCATCACCACCACCACCAAACCACCACCACCAGCAGACCCTTCTTTCCACCCTCAACTAGGCCTACTACTGGTGCTGCCGTGGCTCATCTCTTCCACAATTCTTCAAGAACTGATCAAACTGTTAAAGAAGAGAGCCTCTGCAACATGTTCTGTGGCATCGACGATCAAACAGCGTTTTGGCCATGGTTGGACCAACCACAATTCAACTGA

Network for GWHGAAZE013537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	33	86	2.10E-15
PF02183.19	HALZ	88	128	2.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	240.565
	SRR3591706	second leaf	5.191
	SRR3591707	mature leaf	1.872
	SRR3591708	Shoot apex	100.352
	SRR3591709	Stem	134.778
	SRR3591710	White floral bud	4.065
	SRR3591711	White flower	12.909
	SRR3591712	Green floral bud	2.151
	SRR3591713	Yellow flower	17.899
SRP173429	SRR8316895	Juvenile bud stage	28.793
	SRR8316896	Juvenile bud stage	21.712
	SRR8316897	Juvenile bud stage	7.870
	SRR8316894	Third green stage	7.874
	SRR8316900	Third green stage	12.372
	SRR8316901	Third green stage	9.179
	SRR8316898	Complete white stage	0.490
	SRR8316899	Complete white stage	13.787
	SRR8316903	Complete white stage	2.033
	SRR8316902	Silver flowering stage	2.649
	SRR8316904	Silver flowering stage	5.967
	SRR8316905	Silver flowering stage	1.792
	SRR8316906	Gold flowering stage	0.644
	SRR8316907	Gold flowering stage	6.357
	SRR8316908	Gold flowering stage	3.137
SRP132670	SRR6706286	Control	22.509
	SRR6706287	Light intensity 50%	24.825
	SRR6706288	Light intensity 20%	22.324
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.649
	CNS0095593	Slightly white alabastrum(diploid) 2	28.731
	CNS0095594	Slightly white alabastrum(diploid) 3	24.984
	CNS0095595	Whole white alabastrum(diploid) 2	19.818
	CNS0095596	Whole white alabastrum(diploid) 3	18.985
	CNS0095597	Whole white alabastrum(diploid) 4	16.279
	CNS0095598	Silvery flower (diploied) 1	28.379
	CNS0095599	Silvery flower (diploied) 2	27.407
	CNS0095600	Silvery flower (diploied) 3	11.446
	CNS0095601	Golden flower (diploid) 1	26.294
	CNS0095602	Golden flower (diploid) 2	17.677
	CNS0095603	Golden flower (diploid) 3	18.477
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.408
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.066
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.603
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.432
	CNS0095610	Silvery flower (tetraploid) 1	7.778
	CNS0095611	Silvery flower (tetraploid) 2	11.880
	CNS0095612	Silvery flower (tetraploid) 3	11.191
	CNS0095613	Golden flower (tetraploid) 1	6.569
	CNS0095614	Golden flower (tetraploid) 2	6.318
	CNS0095615	Golden flower (tetraploid) 3	2.318
CRA001975	CRR073297	Stem 1	76.160
	CRR073298	Stem 2	64.353
	CRR073299	Stem 3	89.183
	CRR073300	Leaf 1	42.258
	CRR073301	Leaf 2	64.806
	CRR073302	Leaf 3	47.819
	CRR073303	Juvenile bud 1	35.395
	CRR073304	Juvenile bud 2	4.429
	CRR073305	Juvenile bud 3	39.654
	CRR073306	Third green 1	33.868
	CRR073307	Third green 2	66.906
	CRR073308	Third green 3	40.398
	CRR073309	Second white 1	11.033
	CRR073310	Second white 2	2.810
	CRR073311	Second white 3	2.753
	CRR073312	Silver flowering 1	2.004
	CRR073313	Silver flowering 2	0.632
	CRR073314	Silver flowering 3	3.821
	CRR073315	Gold flowering 1	3.066
	CRR073316	Gold flowering 2	1.899
	CRR073317	Gold flowering 3	5.109
	CRR073318	Tawny withering 1	69.439
	CRR073319	Tawny withering 2	36.729
	CRR073320	Tawny withering 3	73.310