Gene detail

Detail information of GWHGAAZE013539

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652303.1	0	PREDICTED: uncharacterized protein LOC100246639 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9S7G7\|MB3R1_ARATH	5E-18	Myb-related protein 3R-1
trEMBL	tr\|D7TNB9\|D7TNB9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31992.3}
TAIR10	AT2G02820.2	1E-124	myb domain protein 88

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104094264	104098649	+
GWHAAZE00000003	mRNA	104094264	104098649	+
GWHAAZE00000003	exon	104094264	104094451	+
GWHAAZE00000003	exon	104094546	104094602	+
GWHAAZE00000003	exon	104094736	104094808	+
GWHAAZE00000003	exon	104095061	104095116	+
GWHAAZE00000003	exon	104095198	104095377	+
GWHAAZE00000003	exon	104095448	104095641	+
GWHAAZE00000003	exon	104095873	104096018	+
GWHAAZE00000003	exon	104096409	104096551	+
GWHAAZE00000003	exon	104096633	104096853	+
GWHAAZE00000003	exon	104096972	104097117	+
GWHAAZE00000003	exon	104098300	104098649	+
GWHAAZE00000003	CDS	104094264	104094451	+
GWHAAZE00000003	CDS	104094546	104094602	+
GWHAAZE00000003	CDS	104094736	104094808	+
GWHAAZE00000003	CDS	104095061	104095116	+
GWHAAZE00000003	CDS	104095198	104095377	+
GWHAAZE00000003	CDS	104095448	104095641	+
GWHAAZE00000003	CDS	104095873	104096018	+
GWHAAZE00000003	CDS	104096409	104096551	+
GWHAAZE00000003	CDS	104096633	104096853	+
GWHAAZE00000003	CDS	104096972	104097117	+
GWHAAZE00000003	CDS	104098300	104098410	+
GWHAAZE00000003	three_prime_UTR	104098411	104098649	+

Transcript Sequence
>GWHTAAZE013553 CAAGTTCCCAAGTTGAAAGAGCGACACATCGTTACGTGGTCTCAGGAGGTGGTTTATTCTTCTTCACTCCTCTGTTTTCCAAATTCATGTTGTAATTTTGTTTGCCGGATTTTCGCCTCACTTGAATTATCTGACTTTCAGGAGGATGATATATTACGCGAACAAATTCGTATCCATGGAACAGACAATTGGGCTGTAATTGCATCGAAATTCAAAGACAAAACCACAAGACAATGCAGGAGGAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGGGGGTGGTCACCAGAGGAAGACATTCTTTTATGTGAGGCTCAGAAGATATTTGGTAACAGATGGACTGAAATAGCGAAAGTGGTTTCAGGCAGAACCGACAACGCTGTGAAAAATAGATTCTCCACCTTATGTAAGAAGAAAGCAAAGCATGAAGCCTCAGCAAAAGAGAACAACACTTCCTATGTCAACCTAAACAACGAAAGGGTAGTGTTTGAAAATGGGCTCAACACAGATGGAATACTAGAGACTGCAGTGCCTCTTAAGAAGATAAGAACTTCTGTGGTTAGGAGGAACCACATCTCTGATTCAACAGAAAATTGCAACCACGGAGAGATACTCAGGAAATGTGGAACACGAAATCAGCAGCTTAGAACTCCATTAGCTGCACTGGTTCAAAAATTCCAGTGTGTTAGTGATTCGCCGACTCAGCATTGTGCCAACAACACCATGGAGGTTTCCAATGATGGTAGTAATGACATGGTTCAAGGAACGTATCTCAAGAAGGATGATCCAAAGATTATTGCACTGATGCAACAAGCAGAACTTCTCAGCTCGCTTGCACTCAAAGTAAATACAGAGAACACAGACCAAAGTCTTGAAAATACATGGAAGGTCCTCCAAGATTTTCTCACTAAAACCACAGAAAGGGATATGCTCAGATTCAAAATTTCTGACATGGATTTCCATCTTGAGAATTTCAAAGACTGGGTGGAGGACGTAAGGAGTAGTAATGATGGCAGTCAACCCTCTTGGAGGCATCTAGAATCATATGAGGGTTCACCAGAAAGCTCTGAGTATAGTACCGGATCAACTATCCTGCTGCATACAATGGATGACAGAACAGAACAAACCCAACCCATGCTATATGCACCACATCAGGATGTTGAAGCTGAACTGCAATCAACTCGTATGGGGGAGTCAAATGGGCTTGCTGAAGGTAACAATGGAATTGTCTCTGGTGAAACCACAAGTTCAGATATCTTACCATCTTGTGATCAAGTAAAAACTGATGATGAAGCAGTTTATGCCTTGCGAAGCACAGAATTCACTTCCCCACTTCAAGTAACTCCGTTGTTCAGATCCTTGGCAGCAGAGATTCCCAGCCCTTACTTTTCAGAGAGCGAGAGGCATTTTCTACTGAAAACACTTGGAGTGGAGTCCCCATCACTGAATCCAAGCACCAAACCATCACAGCCTCCACCCTGCAAAAGGGTCCTTCTTCCCAGTCTATGATCATTCACTGAACTTTCTATCATGATACATACGCCATTATACCTACTATATCCCTAGTTTCCATTCTGGAGTCTTTCTTCTATTTAGATCTGCCTTTGAAGTTAGAATGCTACGGTGCATTCTAGCATCCTTTAAAGATCTGACAATATGTTTTTGCAGCCCTTTTTTTCGAGTATACCAACCCTAATACTCGCATTGATTTCCCGTGTGCTTTCCATTCGTTTGTGTGCTTTGTCATG

Network for GWHGAAZE013539

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	47	87	1.70E-09
PF00249.32	Myb_DNA-binding	93	136	1.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.662
	SRR3591706	second leaf	19.207
	SRR3591707	mature leaf	80.087
	SRR3591708	Shoot apex	14.419
	SRR3591709	Stem	34.764
	SRR3591710	White floral bud	11.170
	SRR3591711	White flower	21.762
	SRR3591712	Green floral bud	7.328
	SRR3591713	Yellow flower	22.806
SRP173429	SRR8316895	Juvenile bud stage	2.929
	SRR8316896	Juvenile bud stage	4.644
	SRR8316897	Juvenile bud stage	2.019
	SRR8316894	Third green stage	1.831
	SRR8316900	Third green stage	4.401
	SRR8316901	Third green stage	3.639
	SRR8316898	Complete white stage	2.864
	SRR8316899	Complete white stage	6.797
	SRR8316903	Complete white stage	3.392
	SRR8316902	Silver flowering stage	1.842
	SRR8316904	Silver flowering stage	2.781
	SRR8316905	Silver flowering stage	1.014
	SRR8316906	Gold flowering stage	4.341
	SRR8316907	Gold flowering stage	2.423
	SRR8316908	Gold flowering stage	6.321
SRP132670	SRR6706286	Control	3.260
	SRR6706287	Light intensity 50%	2.691
	SRR6706288	Light intensity 20%	3.026
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.457
	CNS0095593	Slightly white alabastrum(diploid) 2	2.378
	CNS0095594	Slightly white alabastrum(diploid) 3	2.218
	CNS0095595	Whole white alabastrum(diploid) 2	2.683
	CNS0095596	Whole white alabastrum(diploid) 3	2.162
	CNS0095597	Whole white alabastrum(diploid) 4	2.769
	CNS0095598	Silvery flower (diploied) 1	4.706
	CNS0095599	Silvery flower (diploied) 2	3.269
	CNS0095600	Silvery flower (diploied) 3	5.927
	CNS0095601	Golden flower (diploid) 1	6.569
	CNS0095602	Golden flower (diploid) 2	11.044
	CNS0095603	Golden flower (diploid) 3	12.058
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.651
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.378
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.398
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.034
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.634
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.541
	CNS0095610	Silvery flower (tetraploid) 1	11.020
	CNS0095611	Silvery flower (tetraploid) 2	9.503
	CNS0095612	Silvery flower (tetraploid) 3	2.771
	CNS0095613	Golden flower (tetraploid) 1	4.760
	CNS0095614	Golden flower (tetraploid) 2	10.913
	CNS0095615	Golden flower (tetraploid) 3	3.847
CRA001975	CRR073297	Stem 1	5.813
	CRR073298	Stem 2	5.167
	CRR073299	Stem 3	4.160
	CRR073300	Leaf 1	6.918
	CRR073301	Leaf 2	4.451
	CRR073302	Leaf 3	4.992
	CRR073303	Juvenile bud 1	5.380
	CRR073304	Juvenile bud 2	4.145
	CRR073305	Juvenile bud 3	6.712
	CRR073306	Third green 1	1.293
	CRR073307	Third green 2	2.721
	CRR073308	Third green 3	2.603
	CRR073309	Second white 1	1.105
	CRR073310	Second white 2	0.758
	CRR073311	Second white 3	0.542
	CRR073312	Silver flowering 1	0.898
	CRR073313	Silver flowering 2	1.754
	CRR073314	Silver flowering 3	1.442
	CRR073315	Gold flowering 1	6.441
	CRR073316	Gold flowering 2	12.691
	CRR073317	Gold flowering 3	4.197
	CRR073318	Tawny withering 1	39.255
	CRR073319	Tawny withering 2	28.277
	CRR073320	Tawny withering 3	43.900