Gene detail

Detail information of GWHGAAZE013555

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086412.1	0	PREDICTED: AMP deaminase-like [Sesamum indicum]
Swissprot	tr\|O80452\|AMPD_ARATH	0	AMP deaminase
trEMBL	tr\|A0A022QIZ3\|A0A022QIZ3_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU28692.1}
TAIR10	AT2G38280.2	2E-171	AMP deaminase, putative / myoadenylate deaminase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104305728	104314676	+
GWHAAZE00000003	mRNA	104305728	104314676	+
GWHAAZE00000003	exon	104305728	104305748	+
GWHAAZE00000003	exon	104306558	104306656	+
GWHAAZE00000003	exon	104306994	104307107	+
GWHAAZE00000003	exon	104307718	104307858	+
GWHAAZE00000003	exon	104311435	104311587	+
GWHAAZE00000003	exon	104312190	104312243	+
GWHAAZE00000003	exon	104312329	104312439	+
GWHAAZE00000003	exon	104312946	104313119	+
GWHAAZE00000003	exon	104313206	104313286	+
GWHAAZE00000003	exon	104314165	104314263	+
GWHAAZE00000003	exon	104314608	104314676	+
GWHAAZE00000003	CDS	104305728	104305748	+
GWHAAZE00000003	CDS	104306558	104306656	+
GWHAAZE00000003	CDS	104306994	104307107	+
GWHAAZE00000003	CDS	104307718	104307858	+
GWHAAZE00000003	CDS	104311435	104311587	+
GWHAAZE00000003	CDS	104312190	104312243	+
GWHAAZE00000003	CDS	104312329	104312439	+
GWHAAZE00000003	CDS	104312946	104313119	+
GWHAAZE00000003	CDS	104313206	104313286	+
GWHAAZE00000003	CDS	104314165	104314263	+
GWHAAZE00000003	CDS	104314608	104314676	+

Transcript Sequence
>GWHTAAZE013569 ATGGTTTTTGAGGAGGATAGGTTTTTCTTGGTTCTAAATATTGAGGCTAAAATTTCAGGGCGTTTCATAGGAGAAGTGACAAAGCAAGTATTAGCAGATCTTGAAGCAAGTAAATACCAGATGGCCGAATATAGAATATCAATATATGGAAGGAAACAGAGCGAGTGGGATCAGTTGGCAAGTTGGTTCATTAACAATGGGATTCACAGTGAGAATGCTGTTTGGTTAATCCAGCTTCCAAGGCTTTATAACGTGTACAAGAGTTTGGGAACTGTTACATCCTTTCAGAATATTTTGGACAATGTGTTCATTCCTCTTTTTGAAGTCACAATTGATCCGAACTCTCATCCTCAACTACATGTGTTCTTAATGCAGGTTGTGGGTTTTGACATCGTGGATGATGAAAGTAAACCAGAAAGGCGACCAACTAAGCACATGCCAAAGCCGTCGGAATGGACAAATGAGTTCAATCCCGCATATTCCTATTATGCTTATTACTGCTATGCAAACTTCTACACTCTCAATAAGCTTCGTGAATCAAAAGGAATGCAAACAATCAGATTCCGGCCTCATTGCGGAGAGGCTGGTGATATTGATCATTTGGCTGCTGGCTTCCTTCTATGCCATAATATCTCTCATGGGATCAATTTACGAAAATCTCCAGTATTGCAGTATTTGTACTACCTTGCTCAGATTGGATTGATGATGTCTCCACTGAGCAATAATTCCCTTTTCCTGGACTATCATCGCAACCCATTTCCCATGTTCTTCCAGCGTGGCTTAAATGTTTCACTCTCTAGTGATGATCCTCTGCAAATACATTTAACAAAAGAACCTCTAGTGGAAGAATACAGCGTTGCAGCAAAGGTTTGGAAGCTGAGTTCCTGCGACCTTTGTGAGATAGCAAGAAACTCTGTTTATCAATCAGGATTCTCACATGCAGCCAAGTTGCATTGGCTCGGTAACAAATATTTCAAGAGGGGACCAGAAGGAAACGATATTCACAAGACAAATGTACCCCATTTAAGGATTTCCTTTCGGCATGAGACGTGGAAAGAAGAGATGCAGTATGTCTATTCTGGAAGAGCCAGGCTTCCTGAAGATATTGATCATTGA

Network for GWHGAAZE013555

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00962.23	A_deaminase	42	321	2.40E-100

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01490	AMPD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0009168	biological_process	purine ribonucleoside monophosphate biosynthetic process
GO:0019239	molecular_function	deaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.050
	SRR3591706	second leaf	6.084
	SRR3591707	mature leaf	6.436
	SRR3591708	Shoot apex	14.447
	SRR3591709	Stem	14.363
	SRR3591710	White floral bud	20.944
	SRR3591711	White flower	26.753
	SRR3591712	Green floral bud	22.629
	SRR3591713	Yellow flower	14.649
SRP173429	SRR8316895	Juvenile bud stage	14.740
	SRR8316896	Juvenile bud stage	19.315
	SRR8316897	Juvenile bud stage	11.883
	SRR8316894	Third green stage	7.780
	SRR8316900	Third green stage	22.493
	SRR8316901	Third green stage	19.744
	SRR8316898	Complete white stage	9.644
	SRR8316899	Complete white stage	22.177
	SRR8316903	Complete white stage	17.463
	SRR8316902	Silver flowering stage	12.348
	SRR8316904	Silver flowering stage	20.154
	SRR8316905	Silver flowering stage	7.670
	SRR8316906	Gold flowering stage	16.038
	SRR8316907	Gold flowering stage	13.338
	SRR8316908	Gold flowering stage	16.933
SRP132670	SRR6706286	Control	10.217
	SRR6706287	Light intensity 50%	13.261
	SRR6706288	Light intensity 20%	12.948
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.624
	CNS0095593	Slightly white alabastrum(diploid) 2	14.839
	CNS0095594	Slightly white alabastrum(diploid) 3	14.134
	CNS0095595	Whole white alabastrum(diploid) 2	11.065
	CNS0095596	Whole white alabastrum(diploid) 3	14.310
	CNS0095597	Whole white alabastrum(diploid) 4	9.873
	CNS0095598	Silvery flower (diploied) 1	8.936
	CNS0095599	Silvery flower (diploied) 2	8.524
	CNS0095600	Silvery flower (diploied) 3	28.335
	CNS0095601	Golden flower (diploid) 1	7.662
	CNS0095602	Golden flower (diploid) 2	13.686
	CNS0095603	Golden flower (diploid) 3	14.278
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.111
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.073
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.838
	CNS0095610	Silvery flower (tetraploid) 1	17.689
	CNS0095611	Silvery flower (tetraploid) 2	17.259
	CNS0095612	Silvery flower (tetraploid) 3	12.590
	CNS0095613	Golden flower (tetraploid) 1	6.752
	CNS0095614	Golden flower (tetraploid) 2	11.392
	CNS0095615	Golden flower (tetraploid) 3	7.370
CRA001975	CRR073297	Stem 1	11.850
	CRR073298	Stem 2	11.493
	CRR073299	Stem 3	10.972
	CRR073300	Leaf 1	9.594
	CRR073301	Leaf 2	9.264
	CRR073302	Leaf 3	10.806
	CRR073303	Juvenile bud 1	9.939
	CRR073304	Juvenile bud 2	7.542
	CRR073305	Juvenile bud 3	11.664
	CRR073306	Third green 1	4.446
	CRR073307	Third green 2	5.055
	CRR073308	Third green 3	5.641
	CRR073309	Second white 1	6.105
	CRR073310	Second white 2	7.708
	CRR073311	Second white 3	3.612
	CRR073312	Silver flowering 1	4.016
	CRR073313	Silver flowering 2	4.454
	CRR073314	Silver flowering 3	2.260
	CRR073315	Gold flowering 1	4.266
	CRR073316	Gold flowering 2	5.585
	CRR073317	Gold flowering 3	2.273
	CRR073318	Tawny withering 1	7.863
	CRR073319	Tawny withering 2	8.495
	CRR073320	Tawny withering 3	7.307