Detail information of GWHGAAZE013572


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006438523.12.19367E-87hypothetical protein CICLE_v10032167mg [Citrus clementina]
Swissprottr|Q2V9B0|MY1R1_SOLTU3E-48Transcription factor MYB1R1
trEMBLtr|V4SV57|V4SV57_9ROSI8E-88Uncharacterized protein {ECO:0000313|EMBL:ESR51763.1}
TAIR10AT1G70000.25E-49myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene104580869104582009-
GWHAAZE00000003mRNA104580869104582009-
GWHAAZE00000003exon104581844104582009-
GWHAAZE00000003exon104581473104581681-
GWHAAZE00000003exon104580869104581147-
GWHAAZE00000003CDS104581844104582009-
GWHAAZE00000003CDS104581473104581681-
GWHAAZE00000003CDS104580869104581147-
Transcript Sequence

Network for GWHGAAZE013572

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding581021.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf120.906
SRR3591706second leaf125.071
SRR3591707mature leaf169.423
SRR3591708Shoot apex117.616
SRR3591709Stem128.221
SRR3591710White floral bud81.302
SRR3591711White flower76.088
SRR3591712Green floral bud50.120
SRR3591713Yellow flower38.558
SRP173429 SRR8316895Juvenile bud stage 25.351
SRR8316896Juvenile bud stage 30.631
SRR8316897Juvenile bud stage 11.489
SRR8316894Third green stage 15.402
SRR8316900Third green stage 45.974
SRR8316901Third green stage 38.099
SRR8316898Complete white stage 22.884
SRR8316899Complete white stage 130.354
SRR8316903Complete white stage 44.533
SRR8316902Silver flowering stage43.069
SRR8316904Silver flowering stage40.556
SRR8316905Silver flowering stage23.694
SRR8316906Gold flowering stage 67.375
SRR8316907Gold flowering stage 63.990
SRR8316908Gold flowering stage 131.462
SRP132670SRR6706286Control49.678
SRR6706287Light intensity 50%43.516
SRR6706288Light intensity 20%41.498
CNP0000432CNS0095592Slightly white alabastrum(diploid) 141.184
CNS0095593Slightly white alabastrum(diploid) 254.280
CNS0095594Slightly white alabastrum(diploid) 336.456
CNS0095595Whole white alabastrum(diploid) 241.164
CNS0095596Whole white alabastrum(diploid) 328.471
CNS0095597Whole white alabastrum(diploid) 429.952
CNS0095598Silvery flower (diploied) 161.562
CNS0095599Silvery flower (diploied) 236.005
CNS0095600Silvery flower (diploied) 340.421
CNS0095601Golden flower (diploid) 127.416
CNS0095602Golden flower (diploid) 236.853
CNS0095603Golden flower (diploid) 337.362
CNS0095604Slightly white alabastrum(tetraploid) 149.036
CNS0095605Slightly white alabastrum(tetraploid) 242.393
CNS0095606Slightly white alabastrum(tetraploid) 393.116
CNS0095607Whole white alabastrum(tetraploid) 138.656
CNS0095608Whole white alabastrum(tetraploid) 219.510
CNS0095609Whole white alabastrum(tetraploid) 333.912
CNS0095610Silvery flower (tetraploid) 195.148
CNS0095611Silvery flower (tetraploid) 271.392
CNS0095612Silvery flower (tetraploid) 366.263
CNS0095613Golden flower (tetraploid) 158.545
CNS0095614Golden flower (tetraploid) 257.445
CNS0095615Golden flower (tetraploid) 3153.406
CRA001975CRR073297Stem 183.643
CRR073298Stem 283.538
CRR073299Stem 3130.053
CRR073300Leaf 194.544
CRR073301Leaf 2102.922
CRR073302Leaf 3124.394
CRR073303Juvenile bud 1130.852
CRR073304Juvenile bud 2109.052
CRR073305Juvenile bud 3161.477
CRR073306Third green 1398.547
CRR073307Third green 2513.009
CRR073308Third green 3368.893
CRR073309Second white 1232.988
CRR073310Second white 2138.285
CRR073311Second white 3100.751
CRR073312Silver flowering 154.694
CRR073313Silver flowering 246.758
CRR073314Silver flowering 349.030
CRR073315Gold flowering 1140.052
CRR073316Gold flowering 2140.453
CRR073317Gold flowering 3166.280
CRR073318Tawny withering 1127.663
CRR073319Tawny withering 2115.367
CRR073320Tawny withering 3121.322