Gene detail

Detail information of GWHGAAZE013581

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00220.1	6.8277E-152	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FE91\|C3H62_ARATH	4E-15	Zinc finger CCCH domain-containing protein 62
trEMBL	tr\|A0A068TVC9\|A0A068TVC9_COFCA	3E-152	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00220.1}
TAIR10	AT1G24130.1	2E-103	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104775633	104776685	+
GWHAAZE00000003	mRNA	104775633	104776685	+
GWHAAZE00000003	exon	104775633	104776685	+
GWHAAZE00000003	CDS	104775633	104776685	+

Transcript Sequence
>GWHTAAZE013595 ATGTTTCCATGTCCTTTGCCCTTCAAATCAAATCAAGAATTTGACTCCCATCACTCAACCCCAGTCCTCCAATCAGAATCCTCAGATTCCTCTCTCTCCTCAATCCCATCCCTAGCCTCACTTCCACAACCACCCACGCGACACCGCTGCATCACTACCCTGAACTCCCACTCCCCCGTGTTCTCCCTCACCCTCGCCGGAAAACACCTCTTCACCGGCTCCTCCACAGCCCAAATCCTCATCTGGAGCCGTGACCCCCCCAACAATAACACAGTCGCCTCCACCAAAAGTGCAATCAAATCGCTCCAAGTATTGGGCAACAGACTCTTCAGTGCCCACCACGACCATAAAATTCGCGTGTGGAAAATCAACGGCGAAACTGACACGAAAGTCAAGTTACTCGCTACCCTCCCGACGCTCAACGACCGAATCACGAGGGTATTGTTTGCCAAAAACTATATTAAAGTGCGCAGGCAAAAGAAACGCACGTGGGTTCATCACGCGGACACAATTTCTGCTCTGGCTTTGAATAATGATGGGTCTCTGCTTTACTCTGTTTCTTGGGATAGAACATTTAAAGTGTGGAGAACTAGTGATTTTAAATGTTTGGAGTCTGTTTGGAACGCGCATGACGATGCAATAAACGCAGTTGTGCTATCCAAGGATGGGTTCGTGTATACTGGGTCGGCGGATAGGAAGATTAAGGTGTGGAAAATTCAAACAGGGGATAAGAAGCACATATTAGTGAATACACTTGAGAAACATAAATCAACTGTGAATGCTTTGGCACTTAGTAGTGATGGGTCTGTCTTATATTCGGGCGCCTATGATCGCTCCATAATTGTTTGGGAAAGGAGTGGTGGTGGAGATATGGTGGTTGTGGGTGCACTTAGAGGGCACAAGAAATCGATTTTGTGCTTGGTGCTAGCGGGGGATTTGGTATGTAGTGGATCGGCTGATAAAACAATTCGGATTTGGGGGAGAGGGATTGAGAATAGTTATCCTTGTTTGGCGGTTTTTGAGGGACATACAGGTCCAGTAAAGTGTTTGGCT

Network for GWHGAAZE013581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	159	195	0.0009
PF00400.33	WD40	206	238	0.023
PF00400.33	WD40	249	283	0.00023
PF00400.33	WD40	295	326	0.00016

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.140
	SRR3591706	second leaf	0.408
	SRR3591707	mature leaf	1.267
	SRR3591708	Shoot apex	0.381
	SRR3591709	Stem	4.993
	SRR3591710	White floral bud	9.238
	SRR3591711	White flower	12.040
	SRR3591712	Green floral bud	6.482
	SRR3591713	Yellow flower	15.424
SRP173429	SRR8316895	Juvenile bud stage	0.110
	SRR8316896	Juvenile bud stage	0.182
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.064
	SRR8316900	Third green stage	0.084
	SRR8316901	Third green stage	0.209
	SRR8316898	Complete white stage	0.140
	SRR8316899	Complete white stage	0.781
	SRR8316903	Complete white stage	0.139
	SRR8316902	Silver flowering stage	1.657
	SRR8316904	Silver flowering stage	1.954
	SRR8316905	Silver flowering stage	1.612
	SRR8316906	Gold flowering stage	8.090
	SRR8316907	Gold flowering stage	5.551
	SRR8316908	Gold flowering stage	17.147
SRP132670	SRR6706286	Control	0.319
	SRR6706287	Light intensity 50%	0.365
	SRR6706288	Light intensity 20%	0.198
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.194
	CNS0095593	Slightly white alabastrum(diploid) 2	0.039
	CNS0095594	Slightly white alabastrum(diploid) 3	0.209
	CNS0095595	Whole white alabastrum(diploid) 2	0.107
	CNS0095596	Whole white alabastrum(diploid) 3	0.226
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	1.560
	CNS0095599	Silvery flower (diploied) 2	1.186
	CNS0095600	Silvery flower (diploied) 3	3.744
	CNS0095601	Golden flower (diploid) 1	2.196
	CNS0095602	Golden flower (diploid) 2	6.373
	CNS0095603	Golden flower (diploid) 3	5.505
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.021
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.255
	CNS0095610	Silvery flower (tetraploid) 1	6.568
	CNS0095611	Silvery flower (tetraploid) 2	4.259
	CNS0095612	Silvery flower (tetraploid) 3	9.457
	CNS0095613	Golden flower (tetraploid) 1	6.252
	CNS0095614	Golden flower (tetraploid) 2	4.324
	CNS0095615	Golden flower (tetraploid) 3	22.531
CRA001975	CRR073297	Stem 1	0.631
	CRR073298	Stem 2	0.640
	CRR073299	Stem 3	0.313
	CRR073300	Leaf 1	0.532
	CRR073301	Leaf 2	0.925
	CRR073302	Leaf 3	0.368
	CRR073303	Juvenile bud 1	0.681
	CRR073304	Juvenile bud 2	0.940
	CRR073305	Juvenile bud 3	1.768
	CRR073306	Third green 1	1.258
	CRR073307	Third green 2	1.546
	CRR073308	Third green 3	1.512
	CRR073309	Second white 1	8.012
	CRR073310	Second white 2	8.574
	CRR073311	Second white 3	11.637
	CRR073312	Silver flowering 1	29.424
	CRR073313	Silver flowering 2	23.092
	CRR073314	Silver flowering 3	12.786
	CRR073315	Gold flowering 1	12.737
	CRR073316	Gold flowering 2	13.354
	CRR073317	Gold flowering 3	11.379
	CRR073318	Tawny withering 1	2.676
	CRR073319	Tawny withering 2	0.823
	CRR073320	Tawny withering 3	2.302