Detail information of GWHGAAZE013598


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010274327.10PREDICTED: threonine--tRNA ligase, mitochondrial-like isoform X1 [Nelumbo nucifera]
Swissprottr|O04630|SYTM_ARATH0Threonine--tRNA ligase, mitochondrial (Precursor)
trEMBLtr|A0A068TW21|A0A068TW21_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00192.1}
TAIR10AT5G26830.10Threonyl-tRNA synthetase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene105038777105056840-
GWHAAZE00000003mRNA105038777105056840-
GWHAAZE00000003exon105038777105039077-
GWHAAZE00000003exon105039265105039336-
GWHAAZE00000003exon105043175105043246-
GWHAAZE00000003exon105046330105046551-
GWHAAZE00000003exon105046659105046751-
GWHAAZE00000003exon105048255105048347-
GWHAAZE00000003exon105049203105049289-
GWHAAZE00000003exon105049389105049421-
GWHAAZE00000003exon105051258105051352-
GWHAAZE00000003exon105052207105052291-
GWHAAZE00000003exon105052506105052592-
GWHAAZE00000003exon105052677105052773-
GWHAAZE00000003exon105052863105052951-
GWHAAZE00000003exon105054192105054281-
GWHAAZE00000003exon105054364105054492-
GWHAAZE00000003exon105054580105054654-
GWHAAZE00000003exon105054889105054984-
GWHAAZE00000003exon105055635105055694-
GWHAAZE00000003exon105055792105056029-
GWHAAZE00000003exon105056572105056840-
GWHAAZE00000003CDS105056572105056840-
GWHAAZE00000003CDS105055792105056029-
GWHAAZE00000003CDS105055635105055694-
GWHAAZE00000003CDS105054889105054984-
GWHAAZE00000003CDS105054580105054654-
GWHAAZE00000003CDS105054364105054492-
GWHAAZE00000003CDS105054192105054281-
GWHAAZE00000003CDS105052863105052951-
GWHAAZE00000003CDS105052677105052773-
GWHAAZE00000003CDS105052506105052592-
GWHAAZE00000003CDS105052207105052291-
GWHAAZE00000003CDS105051258105051352-
GWHAAZE00000003CDS105049389105049421-
GWHAAZE00000003CDS105049203105049289-
GWHAAZE00000003CDS105048255105048347-
GWHAAZE00000003CDS105046659105046751-
GWHAAZE00000003CDS105046330105046551-
GWHAAZE00000003CDS105043175105043246-
GWHAAZE00000003CDS105039265105039336-
GWHAAZE00000003CDS105038982105039077-
GWHAAZE00000003three_prime_UTR105038777105038981-
Transcript Sequence

Network for GWHGAAZE013598

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02824.22TGS891491.30E-12
PF07973.15tRNA_SAD2593088.40E-13
PF00587.26tRNA-synt_2b4096181.70E-38
PF03129.21HGTP_anticodon6307198.50E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01868TARS, thrS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006435biological_processthreonyl-tRNA aminoacylation
GO:0043039biological_processtRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0004829molecular_functionthreonine-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf78.864
SRR3591706second leaf19.619
SRR3591707mature leaf23.297
SRR3591708Shoot apex76.067
SRR3591709Stem52.104
SRR3591710White floral bud31.664
SRR3591711White flower55.689
SRR3591712Green floral bud54.440
SRR3591713Yellow flower40.887
SRP173429 SRR8316895Juvenile bud stage 36.585
SRR8316896Juvenile bud stage 57.775
SRR8316897Juvenile bud stage 26.280
SRR8316894Third green stage 22.051
SRR8316900Third green stage 66.819
SRR8316901Third green stage 59.554
SRR8316898Complete white stage 16.988
SRR8316899Complete white stage 64.696
SRR8316903Complete white stage 23.925
SRR8316902Silver flowering stage20.976
SRR8316904Silver flowering stage25.422
SRR8316905Silver flowering stage8.747
SRR8316906Gold flowering stage 38.278
SRR8316907Gold flowering stage 35.612
SRR8316908Gold flowering stage 38.327
SRP132670SRR6706286Control46.928
SRR6706287Light intensity 50%50.034
SRR6706288Light intensity 20%54.742
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.877
CNS0095593Slightly white alabastrum(diploid) 247.195
CNS0095594Slightly white alabastrum(diploid) 340.815
CNS0095595Whole white alabastrum(diploid) 235.582
CNS0095596Whole white alabastrum(diploid) 339.366
CNS0095597Whole white alabastrum(diploid) 430.730
CNS0095598Silvery flower (diploied) 136.018
CNS0095599Silvery flower (diploied) 238.568
CNS0095600Silvery flower (diploied) 343.622
CNS0095601Golden flower (diploid) 126.695
CNS0095602Golden flower (diploid) 236.306
CNS0095603Golden flower (diploid) 334.650
CNS0095604Slightly white alabastrum(tetraploid) 144.688
CNS0095605Slightly white alabastrum(tetraploid) 237.313
CNS0095606Slightly white alabastrum(tetraploid) 374.607
CNS0095607Whole white alabastrum(tetraploid) 126.323
CNS0095608Whole white alabastrum(tetraploid) 224.507
CNS0095609Whole white alabastrum(tetraploid) 356.399
CNS0095610Silvery flower (tetraploid) 161.015
CNS0095611Silvery flower (tetraploid) 245.005
CNS0095612Silvery flower (tetraploid) 347.498
CNS0095613Golden flower (tetraploid) 125.924
CNS0095614Golden flower (tetraploid) 236.079
CNS0095615Golden flower (tetraploid) 315.749
CRA001975CRR073297Stem 149.273
CRR073298Stem 248.526
CRR073299Stem 349.053
CRR073300Leaf 158.543
CRR073301Leaf 251.157
CRR073302Leaf 348.164
CRR073303Juvenile bud 156.162
CRR073304Juvenile bud 237.675
CRR073305Juvenile bud 347.165
CRR073306Third green 117.367
CRR073307Third green 213.189
CRR073308Third green 318.896
CRR073309Second white 115.620
CRR073310Second white 220.142
CRR073311Second white 316.143
CRR073312Silver flowering 112.449
CRR073313Silver flowering 211.001
CRR073314Silver flowering 39.219
CRR073315Gold flowering 121.729
CRR073316Gold flowering 233.485
CRR073317Gold flowering 318.858
CRR073318Tawny withering 141.412
CRR073319Tawny withering 242.509
CRR073320Tawny withering 351.369