Detail information of GWHGAAZE013599


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00189.10unnamed protein product [Coffea canephora]
Swissprottr|Q9ZUI6|AP1G2_ARATH0AP-1 complex subunit gamma-2
trEMBLtr|A0A068TW96|A0A068TW96_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00189.1}
TAIR10AT1G60070.10Adaptor protein complex AP-1, gamma subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene105094070105108669-
GWHAAZE00000003mRNA105094070105108669-
GWHAAZE00000003exon105108498105108669-
GWHAAZE00000003exon105107008105107077-
GWHAAZE00000003exon105105332105105662-
GWHAAZE00000003exon105105004105105123-
GWHAAZE00000003exon105104138105104311-
GWHAAZE00000003exon105103022105103201-
GWHAAZE00000003exon105102417105102571-
GWHAAZE00000003exon105100473105100563-
GWHAAZE00000003exon105099853105100016-
GWHAAZE00000003exon105099104105099158-
GWHAAZE00000003exon105098424105098546-
GWHAAZE00000003exon105098207105098302-
GWHAAZE00000003exon105097193105097320-
GWHAAZE00000003exon105095771105095875-
GWHAAZE00000003exon105095379105095638-
GWHAAZE00000003exon105094993105095244-
GWHAAZE00000003exon105094737105094912-
GWHAAZE00000003exon105094242105094346-
GWHAAZE00000003exon105094070105094165-
GWHAAZE00000003CDS105108498105108669-
GWHAAZE00000003CDS105107008105107077-
GWHAAZE00000003CDS105105332105105662-
GWHAAZE00000003CDS105105004105105123-
GWHAAZE00000003CDS105104138105104311-
GWHAAZE00000003CDS105103022105103201-
GWHAAZE00000003CDS105102417105102571-
GWHAAZE00000003CDS105100473105100563-
GWHAAZE00000003CDS105099853105100016-
GWHAAZE00000003CDS105099104105099158-
GWHAAZE00000003CDS105098424105098546-
GWHAAZE00000003CDS105098207105098302-
GWHAAZE00000003CDS105097193105097320-
GWHAAZE00000003CDS105095771105095875-
GWHAAZE00000003CDS105095379105095638-
GWHAAZE00000003CDS105094993105095244-
GWHAAZE00000003CDS105094737105094912-
GWHAAZE00000003CDS105094242105094346-
GWHAAZE00000003CDS105094070105094165-
Transcript Sequence

Network for GWHGAAZE013599

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01602.21Adaptin_N976513.60E-133
PF02883.21Alpha_adaptinC28349476.70E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12391AP1G1 Lysosome map04142

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport
GO:0005794cellular_componentGolgi apparatus
GO:0030121cellular_componentAP-1 adaptor complex
GO:0030117cellular_componentmembrane coat

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.112
SRR3591706second leaf16.880
SRR3591707mature leaf12.693
SRR3591708Shoot apex19.068
SRR3591709Stem25.917
SRR3591710White floral bud18.885
SRR3591711White flower21.178
SRR3591712Green floral bud29.290
SRR3591713Yellow flower19.497
SRP173429 SRR8316895Juvenile bud stage 11.730
SRR8316896Juvenile bud stage 18.070
SRR8316897Juvenile bud stage 10.658
SRR8316894Third green stage 9.259
SRR8316900Third green stage 29.218
SRR8316901Third green stage 25.582
SRR8316898Complete white stage 9.418
SRR8316899Complete white stage 24.998
SRR8316903Complete white stage 16.951
SRR8316902Silver flowering stage8.422
SRR8316904Silver flowering stage13.151
SRR8316905Silver flowering stage5.959
SRR8316906Gold flowering stage 17.410
SRR8316907Gold flowering stage 17.524
SRR8316908Gold flowering stage 21.008
SRP132670SRR6706286Control15.810
SRR6706287Light intensity 50%14.791
SRR6706288Light intensity 20%15.963
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.736
CNS0095593Slightly white alabastrum(diploid) 210.781
CNS0095594Slightly white alabastrum(diploid) 39.383
CNS0095595Whole white alabastrum(diploid) 211.150
CNS0095596Whole white alabastrum(diploid) 313.839
CNS0095597Whole white alabastrum(diploid) 411.736
CNS0095598Silvery flower (diploied) 19.755
CNS0095599Silvery flower (diploied) 28.757
CNS0095600Silvery flower (diploied) 320.052
CNS0095601Golden flower (diploid) 18.048
CNS0095602Golden flower (diploid) 217.306
CNS0095603Golden flower (diploid) 317.438
CNS0095604Slightly white alabastrum(tetraploid) 114.059
CNS0095605Slightly white alabastrum(tetraploid) 210.130
CNS0095606Slightly white alabastrum(tetraploid) 318.666
CNS0095607Whole white alabastrum(tetraploid) 112.109
CNS0095608Whole white alabastrum(tetraploid) 210.730
CNS0095609Whole white alabastrum(tetraploid) 319.724
CNS0095610Silvery flower (tetraploid) 116.769
CNS0095611Silvery flower (tetraploid) 218.224
CNS0095612Silvery flower (tetraploid) 317.047
CNS0095613Golden flower (tetraploid) 19.100
CNS0095614Golden flower (tetraploid) 216.088
CNS0095615Golden flower (tetraploid) 314.442
CRA001975CRR073297Stem 119.372
CRR073298Stem 217.386
CRR073299Stem 314.404
CRR073300Leaf 120.551
CRR073301Leaf 220.808
CRR073302Leaf 315.245
CRR073303Juvenile bud 120.099
CRR073304Juvenile bud 212.175
CRR073305Juvenile bud 322.036
CRR073306Third green 18.363
CRR073307Third green 25.683
CRR073308Third green 37.797
CRR073309Second white 17.464
CRR073310Second white 29.120
CRR073311Second white 310.814
CRR073312Silver flowering 110.319
CRR073313Silver flowering 210.016
CRR073314Silver flowering 38.038
CRR073315Gold flowering 15.505
CRR073316Gold flowering 210.690
CRR073317Gold flowering 35.653
CRR073318Tawny withering 117.380
CRR073319Tawny withering 216.493
CRR073320Tawny withering 321.113