Detail information of GWHGAAZE013607


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011041459.10PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Populus euphratica]
Swissprottr|Q8W1K8|MUT11_CHLRE2E-25Protein Mut11
trEMBLtr|F6HPP2|F6HPP2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB56670.1}
TAIR10AT1G10580.10Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene105209770105211853-
GWHAAZE00000003mRNA105209770105211853-
GWHAAZE00000003exon105209770105209818-
GWHAAZE00000003exon105210064105211853-
GWHAAZE00000003CDS105210064105211853-
GWHAAZE00000003CDS105209770105209818-
Transcript Sequence

Network for GWHGAAZE013607

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402983365.10E-06
PF00400.33WD403413792.40E-06
PF00400.33WD404274640.0014
PF00400.33WD405195550.0087
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K12816CDC40, PRP17 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.683
SRR3591706second leaf16.538
SRR3591707mature leaf20.802
SRR3591708Shoot apex24.050
SRR3591709Stem19.078
SRR3591710White floral bud29.404
SRR3591711White flower35.351
SRR3591712Green floral bud29.807
SRR3591713Yellow flower25.782
SRP173429 SRR8316895Juvenile bud stage 17.639
SRR8316896Juvenile bud stage 21.484
SRR8316897Juvenile bud stage 10.769
SRR8316894Third green stage 9.772
SRR8316900Third green stage 31.487
SRR8316901Third green stage 26.940
SRR8316898Complete white stage 10.960
SRR8316899Complete white stage 38.619
SRR8316903Complete white stage 22.096
SRR8316902Silver flowering stage9.950
SRR8316904Silver flowering stage17.108
SRR8316905Silver flowering stage8.527
SRR8316906Gold flowering stage 21.580
SRR8316907Gold flowering stage 18.994
SRR8316908Gold flowering stage 26.764
SRP132670SRR6706286Control30.138
SRR6706287Light intensity 50%29.278
SRR6706288Light intensity 20%27.983
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.465
CNS0095593Slightly white alabastrum(diploid) 214.765
CNS0095594Slightly white alabastrum(diploid) 313.608
CNS0095595Whole white alabastrum(diploid) 216.173
CNS0095596Whole white alabastrum(diploid) 314.328
CNS0095597Whole white alabastrum(diploid) 412.072
CNS0095598Silvery flower (diploied) 119.527
CNS0095599Silvery flower (diploied) 217.103
CNS0095600Silvery flower (diploied) 328.834
CNS0095601Golden flower (diploid) 118.013
CNS0095602Golden flower (diploid) 228.601
CNS0095603Golden flower (diploid) 326.736
CNS0095604Slightly white alabastrum(tetraploid) 119.613
CNS0095605Slightly white alabastrum(tetraploid) 214.032
CNS0095606Slightly white alabastrum(tetraploid) 335.154
CNS0095607Whole white alabastrum(tetraploid) 110.934
CNS0095608Whole white alabastrum(tetraploid) 211.536
CNS0095609Whole white alabastrum(tetraploid) 327.977
CNS0095610Silvery flower (tetraploid) 132.641
CNS0095611Silvery flower (tetraploid) 235.431
CNS0095612Silvery flower (tetraploid) 331.508
CNS0095613Golden flower (tetraploid) 116.708
CNS0095614Golden flower (tetraploid) 228.649
CNS0095615Golden flower (tetraploid) 325.729
CRA001975CRR073297Stem 124.411
CRR073298Stem 224.606
CRR073299Stem 322.093
CRR073300Leaf 120.056
CRR073301Leaf 219.804
CRR073302Leaf 316.546
CRR073303Juvenile bud 119.239
CRR073304Juvenile bud 217.684
CRR073305Juvenile bud 329.286
CRR073306Third green 111.338
CRR073307Third green 29.161
CRR073308Third green 311.698
CRR073309Second white 114.793
CRR073310Second white 211.368
CRR073311Second white 312.876
CRR073312Silver flowering 112.205
CRR073313Silver flowering 213.935
CRR073314Silver flowering 310.740
CRR073315Gold flowering 110.744
CRR073316Gold flowering 216.479
CRR073317Gold flowering 316.259
CRR073318Tawny withering 115.943
CRR073319Tawny withering 212.226
CRR073320Tawny withering 314.167