Gene detail

Detail information of GWHGAAZE013626

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP26619.1	hypothetical protein JCGZ_17777 [Jatropha curcas]
Swissprot	tr\|Q9SGY2\|ACLA1_ARATH	ATP-citrate synthase alpha chain protein 1
trEMBL	tr\|A0A067K4A3\|A0A067K4A3_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP26619.1}
TAIR10	AT1G10670.4	ATP-citrate lyase A-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105449612	105454558	+
GWHAAZE00000003	mRNA	105449612	105454558	+
GWHAAZE00000003	exon	105449612	105449710	+
GWHAAZE00000003	exon	105450856	105451032	+
GWHAAZE00000003	exon	105451128	105451289	+
GWHAAZE00000003	exon	105451419	105451499	+
GWHAAZE00000003	exon	105452107	105452158	+
GWHAAZE00000003	exon	105452288	105452402	+
GWHAAZE00000003	exon	105452546	105452627	+
GWHAAZE00000003	exon	105453040	105453135	+
GWHAAZE00000003	exon	105453391	105453496	+
GWHAAZE00000003	exon	105453583	105453686	+
GWHAAZE00000003	exon	105453780	105453896	+
GWHAAZE00000003	exon	105453999	105454558	+
GWHAAZE00000003	CDS	105449612	105449710	+
GWHAAZE00000003	CDS	105450856	105451032	+
GWHAAZE00000003	CDS	105451128	105451289	+
GWHAAZE00000003	CDS	105451419	105451499	+
GWHAAZE00000003	CDS	105452107	105452158	+
GWHAAZE00000003	CDS	105452288	105452402	+
GWHAAZE00000003	CDS	105452546	105452627	+
GWHAAZE00000003	CDS	105453040	105453135	+
GWHAAZE00000003	CDS	105453391	105453496	+
GWHAAZE00000003	CDS	105453583	105453686	+
GWHAAZE00000003	CDS	105453780	105453896	+
GWHAAZE00000003	CDS	105453999	105454070	+
GWHAAZE00000003	three_prime_UTR	105454071	105454558	+

Transcript Sequence
>GWHTAAZE013640 ATGGCCCGCAAGAAGATCCGAGAGTACGATTCTAAGAGATTGTTGAAGGAGCACTTTAAGAGGCTCTGTGGTGCTGAATTGCCCATTAAATCGGCTCAAGTTACAGAATCAACTGATTTCAATGAGCTGGTAAAGACAGAACCGTGGCTCTCCTCAGCTAAATTGGTTGTGAAACCAGATATGTTATTTGGGAAGCGAGGGAAAAGTGGGCTTGTTGCCTTAAATCTAGATCTGGCTCAAGTTGCTGTGTTTGTGAAAGAGAGACTTGGCAAAGAGGTCGAGATGGGCGGATGCAAAGGACCCATAACGACCTTCATTGTTGAACCATTCATTCCACATAACGAAGAGTTTTACCTCAATATCGTCTCAGAGAGACTTGGATGTAGCATAAGCTTCTCAGAATGTGGAGGAATTGATATTGAAGAGAACTGGGACAAGGTTAAGACAATTTTTGTCCCTACTGGCTCGTCTTTGACATCAGAGACATGTGCTCCACTTGTTGCGGCCCTTCCCTTGGAGGTTAAAACTGTAATTGAGGAGTTCATCAAAGTGATTTTTACCCTATTTTCAGATCTGGACTTCACTTTCCTAGAGATGAATCCTTTCACATTGGTCGACGAAAAGCCTTATCCTTTGGATATGAGAGGAGAGCTTGATGACACTGCTGCTTTCAAGAACTTCAAAAAGTGGGGCAACATTGAATTTCCATTGCCTTTTGGAAGAGTTATGAGTCCAACAGAAAGCTTTATACATGGGCTAGATGAAAAGACCAGTGCCTCTTTGAAGTTCACAGTTCTAAACCCAAAGGGACGAATTTGGACAATGGTTGCTGGAGGAGGTGCCAGTGTCATCTACGCTGATACTGTTGGAGATCTTGGCTTTGCGTCTGAGCTTGGAAACTATGCAGAATATAGTGGAGCACCCAATGAAGAGGAGGTCCTGCAGTATGCCAGGGTTGTAATTGATGTAAATCCTGATGGCCGTAAGAGAGCCCTTGTAGTTGGAGGTGGTATAGCTAACTTCACTGATGTTGCAGCAACATTTAACGGCATAATTCGTGCAATGAAGGAGAAGGAATCAAAGCTTAAAGCTGCAAGAATGCACATATATGTGAGGAGAGGAGGTCCAAATTACCAAAGGGGTCTTGCAAAAATGAGGGCACTCGGAGAGGAAATTGGCATCCCTATTGAGGTGTACGGACCTGAGGAAACGATGACTGGAATATGTAAACAGGCAATTGAGTGCATCATGGCGGCAGCATAGACCTATGAAATTTAGTTGCATCTCTTTCTCCTTGTGTTTTCTTCTAGAATTTCAGCTGCTCGATTAAGTTTAGTGGGGTGTTGTACTAAAAATGTTGGAAGTTTTCATTGTAATTTGGGCTGTAGTATAAAGGCCAACTGAAAATGGTCTATAGGAATCAAATCAGTTGTCCATGTATTCAAGCTACGTTAATAAAGAGCTTCATTTTGTCGTCGTTGCATTTCTTGACGCAGAATGTTAAATTTGTCTTTCCGCATTTCTAATCAAGCCCAGGCTGAGCTTGTGCAATCTCTCTTTCTCACACACAAAGGTCATATTTACCACACATGGTTGGCCCATGCGGCTGGATCCGGAAGAGGTGAAAGGGTGAGCAGGTTATCTCAATACTCGAATTATATCACAATTAAGCACAACACGTTCTGGTAACTTTTAAGGTCTCTTTTGCAAGCACGTGTGTGTCAAAATTCTGCAAATTCAGGAACTCCAAA

Network for GWHGAAZE013626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08442.11	ATP-grasp_2	6	203	3.00E-15
PF16114.6	Citrate_bind	241	414	3.20E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01648	ACLY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Citrate cycle	map00020
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	92.378
	SRR3591706	second leaf	74.647
	SRR3591707	mature leaf	25.295
	SRR3591708	Shoot apex	180.726
	SRR3591709	Stem	61.810
	SRR3591710	White floral bud	97.152
	SRR3591711	White flower	123.074
	SRR3591712	Green floral bud	84.987
	SRR3591713	Yellow flower	135.676
SRP173429	SRR8316895	Juvenile bud stage	39.807
	SRR8316896	Juvenile bud stage	54.852
	SRR8316897	Juvenile bud stage	29.210
	SRR8316894	Third green stage	28.020
	SRR8316900	Third green stage	83.421
	SRR8316901	Third green stage	76.303
	SRR8316898	Complete white stage	49.150
	SRR8316899	Complete white stage	87.174
	SRR8316903	Complete white stage	72.230
	SRR8316902	Silver flowering stage	43.898
	SRR8316904	Silver flowering stage	65.132
	SRR8316905	Silver flowering stage	26.039
	SRR8316906	Gold flowering stage	188.747
	SRR8316907	Gold flowering stage	101.152
	SRR8316908	Gold flowering stage	249.619
SRP132670	SRR6706286	Control	70.620
	SRR6706287	Light intensity 50%	74.775
	SRR6706288	Light intensity 20%	77.468
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.773
	CNS0095593	Slightly white alabastrum(diploid) 2	54.374
	CNS0095594	Slightly white alabastrum(diploid) 3	52.696
	CNS0095595	Whole white alabastrum(diploid) 2	53.375
	CNS0095596	Whole white alabastrum(diploid) 3	44.869
	CNS0095597	Whole white alabastrum(diploid) 4	45.882
	CNS0095598	Silvery flower (diploied) 1	81.144
	CNS0095599	Silvery flower (diploied) 2	79.953
	CNS0095600	Silvery flower (diploied) 3	81.708
	CNS0095601	Golden flower (diploid) 1	43.889
	CNS0095602	Golden flower (diploid) 2	57.447
	CNS0095603	Golden flower (diploid) 3	52.470
	CNS0095604	Slightly white alabastrum(tetraploid) 1	92.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	79.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	133.281
	CNS0095607	Whole white alabastrum(tetraploid) 1	60.436
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.267
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.656
	CNS0095610	Silvery flower (tetraploid) 1	74.387
	CNS0095611	Silvery flower (tetraploid) 2	54.753
	CNS0095612	Silvery flower (tetraploid) 3	80.800
	CNS0095613	Golden flower (tetraploid) 1	52.754
	CNS0095614	Golden flower (tetraploid) 2	103.890
	CNS0095615	Golden flower (tetraploid) 3	22.886
CRA001975	CRR073297	Stem 1	56.731
	CRR073298	Stem 2	55.052
	CRR073299	Stem 3	66.084
	CRR073300	Leaf 1	73.437
	CRR073301	Leaf 2	71.743
	CRR073302	Leaf 3	88.976
	CRR073303	Juvenile bud 1	70.176
	CRR073304	Juvenile bud 2	78.443
	CRR073305	Juvenile bud 3	69.637
	CRR073306	Third green 1	139.285
	CRR073307	Third green 2	83.959
	CRR073308	Third green 3	116.694
	CRR073309	Second white 1	52.180
	CRR073310	Second white 2	56.710
	CRR073311	Second white 3	45.930
	CRR073312	Silver flowering 1	62.405
	CRR073313	Silver flowering 2	61.292
	CRR073314	Silver flowering 3	50.588
	CRR073315	Gold flowering 1	14.180
	CRR073316	Gold flowering 2	16.738
	CRR073317	Gold flowering 3	14.304
	CRR073318	Tawny withering 1	44.975
	CRR073319	Tawny withering 2	39.838
	CRR073320	Tawny withering 3	51.897