Gene detail

Detail information of GWHGAAZE013630

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007044712.1	6.32471E-67	KNOTTED1-like homeobox gene 6 [Theobroma cacao]
Swissprot	tr\|Q84JS6\|KNAT6_ARATH	2E-61	Homeobox protein knotted-1-like 6
trEMBL	tr\|A0A061EE17\|A0A061EE17_THECC	2E-67	KNOTTED1-like homeobox gene 6 {ECO:0000313\|EMBL:EOY00544.1}
TAIR10	AT1G23380.2	7E-45	KNOTTED1-like homeobox gene 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105555577	105558400	+
GWHAAZE00000003	mRNA	105555577	105558400	+
GWHAAZE00000003	exon	105555577	105555653	+
GWHAAZE00000003	exon	105556617	105556663	+
GWHAAZE00000003	exon	105557129	105557379	+
GWHAAZE00000003	exon	105558104	105558400	+
GWHAAZE00000003	CDS	105555577	105555653	+
GWHAAZE00000003	CDS	105556617	105556663	+
GWHAAZE00000003	CDS	105557129	105557379	+
GWHAAZE00000003	CDS	105558104	105558400	+

Transcript Sequence
>GWHTAAZE013644 ATGGCCTTAGAGTGCAGTGGTAAGCACTGGCAGGCATCTGGCAAGAGTGGAGACATTCTCAAACCTGCTCGTTTAAGGGAAGAAGACTTTATCAGAATTGGACGTTGTGCAGTGAATGGGGCCTGTGAAGGTGAAGTCGAAGGTGTTGCATCCTCAGACGAGGAATTTAGTGGTGGAGAGATAGAAGTAATGGAATCACAAACGAGGAGTGATGACCAGGAACTAAAGGATAGGCTATTCCGTAAATTTGGTAGTCACATAAGCACGCTCAAGCTGGAGTTCTCAAAGAAGAAAAAGAAAGGAAAGCTACCCAAAGAGGCAAGGCAAACACTACTTGAATGGTGGAATTTGCACTATAAATGGCCATATCCAACAGAAGGTGACAAAATATCACTGGCCGAAGTAACAGGGCTAGATCAGAGGCAAATTAACAATTGGTTTATAAATCAAAGGAAGAGGCACTGGAAACCATCAGAAAATATGCAGTTAGCAGTTATGGATAGTCTTTCTGGACAGTTCTATGCTGACTGATGAGGTGCATGTATTATAATTAGATGATTATGATTGTTGAATGAATGAATGTATATTCTGAATTGTTTACATTTACCGACGCTTGTTGAAGTGTTATTTTCTGAAATAAGTGACGGAAAATGTCCATTTCCTACCTATTAG

Network for GWHGAAZE013630

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03789.14	ELK	74	95	1.70E-06
PF05920.12	Homeobox_KN	114	153	5.20E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.108
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	15.965
	SRR3591709	Stem	51.862
	SRR3591710	White floral bud	4.684
	SRR3591711	White flower	3.641
	SRR3591712	Green floral bud	3.245
	SRR3591713	Yellow flower	0.325
SRP173429	SRR8316895	Juvenile bud stage	4.197
	SRR8316896	Juvenile bud stage	4.465
	SRR8316897	Juvenile bud stage	4.118
	SRR8316894	Third green stage	2.146
	SRR8316900	Third green stage	3.167
	SRR8316901	Third green stage	3.930
	SRR8316898	Complete white stage	1.075
	SRR8316899	Complete white stage	6.621
	SRR8316903	Complete white stage	2.297
	SRR8316902	Silver flowering stage	1.036
	SRR8316904	Silver flowering stage	1.693
	SRR8316905	Silver flowering stage	0.295
	SRR8316906	Gold flowering stage	0.718
	SRR8316907	Gold flowering stage	1.386
	SRR8316908	Gold flowering stage	3.570
SRP132670	SRR6706286	Control	0.264
	SRR6706287	Light intensity 50%	0.511
	SRR6706288	Light intensity 20%	0.360
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.266
	CNS0095593	Slightly white alabastrum(diploid) 2	19.339
	CNS0095594	Slightly white alabastrum(diploid) 3	12.300
	CNS0095595	Whole white alabastrum(diploid) 2	17.292
	CNS0095596	Whole white alabastrum(diploid) 3	4.467
	CNS0095597	Whole white alabastrum(diploid) 4	7.989
	CNS0095598	Silvery flower (diploied) 1	12.958
	CNS0095599	Silvery flower (diploied) 2	17.349
	CNS0095600	Silvery flower (diploied) 3	4.303
	CNS0095601	Golden flower (diploid) 1	13.679
	CNS0095602	Golden flower (diploid) 2	7.742
	CNS0095603	Golden flower (diploid) 3	6.760
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.218
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.750
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.584
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.686
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.840
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.159
	CNS0095610	Silvery flower (tetraploid) 1	3.783
	CNS0095611	Silvery flower (tetraploid) 2	6.470
	CNS0095612	Silvery flower (tetraploid) 3	1.021
	CNS0095613	Golden flower (tetraploid) 1	3.352
	CNS0095614	Golden flower (tetraploid) 2	3.241
	CNS0095615	Golden flower (tetraploid) 3	1.516
CRA001975	CRR073297	Stem 1	2.723
	CRR073298	Stem 2	1.795
	CRR073299	Stem 3	0.892
	CRR073300	Leaf 1	1.329
	CRR073301	Leaf 2	2.722
	CRR073302	Leaf 3	1.725
	CRR073303	Juvenile bud 1	1.625
	CRR073304	Juvenile bud 2	0.888
	CRR073305	Juvenile bud 3	2.334
	CRR073306	Third green 1	0.683
	CRR073307	Third green 2	0.770
	CRR073308	Third green 3	0.136
	CRR073309	Second white 1	0.162
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.021
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	14.621
	CRR073319	Tawny withering 2	23.536
	CRR073320	Tawny withering 3	16.804