Gene detail

Detail information of GWHGAAZE013635

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002274463.1	PREDICTED: AP-1 complex subunit mu-2 [Vitis vinifera]
Swissprot	tr\|O22715\|AP1M2_ARATH	AP-1 complex subunit mu-2
trEMBL	tr\|D7SYS4\|D7SYS4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23375.3}
TAIR10	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105704980	105711091	-
GWHAAZE00000003	mRNA	105704980	105711091	-
GWHAAZE00000003	exon	105710963	105711091	-
GWHAAZE00000003	exon	105710422	105710568	-
GWHAAZE00000003	exon	105710222	105710284	-
GWHAAZE00000003	exon	105709936	105710112	-
GWHAAZE00000003	exon	105709758	105709861	-
GWHAAZE00000003	exon	105706922	105707029	-
GWHAAZE00000003	exon	105706688	105706784	-
GWHAAZE00000003	exon	105706486	105706583	-
GWHAAZE00000003	exon	105706211	105706352	-
GWHAAZE00000003	exon	105705931	105706053	-
GWHAAZE00000003	exon	105704980	105705066	-
GWHAAZE00000003	CDS	105710963	105711091	-
GWHAAZE00000003	CDS	105710422	105710568	-
GWHAAZE00000003	CDS	105710222	105710284	-
GWHAAZE00000003	CDS	105709936	105710112	-
GWHAAZE00000003	CDS	105709758	105709861	-
GWHAAZE00000003	CDS	105706922	105707029	-
GWHAAZE00000003	CDS	105706688	105706784	-
GWHAAZE00000003	CDS	105706486	105706583	-
GWHAAZE00000003	CDS	105706211	105706352	-
GWHAAZE00000003	CDS	105705931	105706053	-
GWHAAZE00000003	CDS	105704980	105705066	-

Transcript Sequence
>GWHTAAZE013649 ATGGCAGGAGCGGCTTCGGCGCTCTTCCTTCTCGACATAAAGGGCCGTGTTCTGGTCTGGCGCGACTACCGAGGCGACGTCTCTGCCGCTCAGGCCGAGCGCTTCTTCAGTAAACTCATCGAGAAAGAGGGCGATCCGGAGTCTCAAGATCCAGTTGTGTACGACAATGGTGTCACCTATATGTTTATACAACACAACAATGTATATCTGATGACTGCGTCGAGGCAGAACTGCAATGCTGCTAGTCATCTTCTATTTCTCCACAGTGTAGTTGATGTCTTTAAGCATTATTTTGACGAGTTAGAAGAGGAATCACTTAGGGATAATTTTGTCGTAGTGTATGAGTTACTTGACGAAATGATGGACTTTGGTTACCCTCAATATACCGAGGCAAAGATTCTTAGTGAGTTTATCAAGACTGATGCTTACAGAATGGAAGTTTCACAGAGGCCGCCCATGGCTGTGACAAATGCAGTGTCCTGGCGCAGTGAAGGAATACGTTATAAGAAAAATGAAGTGTTTTTAGATGTCGTGGAGAGTGTAAATATACTTGTCAACATCAATGGACAAATAATTAGGTCAGAAGTTATTGGCGCATTAAAGATGCGAACATATTTGAGTGGTATGCCTGAATGTAAGCTTGGGCTAAATGATAGAGTTTTATTGGAGGCGCAAGGACGATCTACCAAGGGAAAAGCCATCGACTTGGATGACATCAAGTTTCATCAGTGCGTCCGTTTGGCCCGTTTTGAAAATGACCGAACTATATCTTTTATACCTCCAGATGGATCTTTTGATCTCATGACATATAGGCTCAGTACCCAGGTAAAGCCTCTGATATGGGTTGAAGCCCAAATTGAGAGGCATTCCAGAAGTCGTATGGAAATCATGGTGAAAGCTCGGAGCCAGTTCAAGGACCGTAGCACTGCCACAAATGTTGAAATTGAGTTGCCTATACCGTCGGATGCCATCAATCCAAATATTCGGACATCGATGGGATCAGCTGCTTATGCACCTGAAAATGATTCATTGGTCTGGAAAATAAAGTCTTTTCCAGGTGGTAAGGAATATATGTTGAGAGCAGAATTCACTCTTCCAAGTATAACAGCTGAAGAAGCAGTTCCTGAGAGAAAGGCACCCATACGTGTGAAGTTTGAGATTCCATATTTTACTGTTTCGGGGATACAGGTGCGGTACTTGAAGATCATTGAGAAAAGTGGGTACCAGGCTCTTCCATGGGTGAGATACATTACAATGGCGGGGAGTATGAATTAA

Network for GWHGAAZE013635

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01217.21	Clat_adaptor_s	7	131	3.80E-06
PF00928.22	Adap_comp_sub	159	423	7.30E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12393	AP1M	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030131	cellular_component	clathrin adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.902
	SRR3591706	second leaf	16.884
	SRR3591707	mature leaf	14.023
	SRR3591708	Shoot apex	30.827
	SRR3591709	Stem	25.189
	SRR3591710	White floral bud	24.084
	SRR3591711	White flower	25.110
	SRR3591712	Green floral bud	29.378
	SRR3591713	Yellow flower	22.640
SRP173429	SRR8316895	Juvenile bud stage	24.357
	SRR8316896	Juvenile bud stage	30.310
	SRR8316897	Juvenile bud stage	18.122
	SRR8316894	Third green stage	15.493
	SRR8316900	Third green stage	42.636
	SRR8316901	Third green stage	40.926
	SRR8316898	Complete white stage	18.730
	SRR8316899	Complete white stage	56.851
	SRR8316903	Complete white stage	22.992
	SRR8316902	Silver flowering stage	15.309
	SRR8316904	Silver flowering stage	25.415
	SRR8316905	Silver flowering stage	12.761
	SRR8316906	Gold flowering stage	44.338
	SRR8316907	Gold flowering stage	40.514
	SRR8316908	Gold flowering stage	45.555
SRP132670	SRR6706286	Control	33.187
	SRR6706287	Light intensity 50%	37.802
	SRR6706288	Light intensity 20%	40.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.858
	CNS0095593	Slightly white alabastrum(diploid) 2	27.437
	CNS0095594	Slightly white alabastrum(diploid) 3	22.806
	CNS0095595	Whole white alabastrum(diploid) 2	27.108
	CNS0095596	Whole white alabastrum(diploid) 3	25.423
	CNS0095597	Whole white alabastrum(diploid) 4	23.454
	CNS0095598	Silvery flower (diploied) 1	21.520
	CNS0095599	Silvery flower (diploied) 2	19.492
	CNS0095600	Silvery flower (diploied) 3	27.556
	CNS0095601	Golden flower (diploid) 1	17.326
	CNS0095602	Golden flower (diploid) 2	22.865
	CNS0095603	Golden flower (diploid) 3	26.456
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.871
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.136
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.874
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.373
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.502
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.398
	CNS0095610	Silvery flower (tetraploid) 1	22.434
	CNS0095611	Silvery flower (tetraploid) 2	25.231
	CNS0095612	Silvery flower (tetraploid) 3	20.978
	CNS0095613	Golden flower (tetraploid) 1	18.822
	CNS0095614	Golden flower (tetraploid) 2	28.738
	CNS0095615	Golden flower (tetraploid) 3	27.110
CRA001975	CRR073297	Stem 1	32.935
	CRR073298	Stem 2	27.859
	CRR073299	Stem 3	30.135
	CRR073300	Leaf 1	36.918
	CRR073301	Leaf 2	30.315
	CRR073302	Leaf 3	39.020
	CRR073303	Juvenile bud 1	34.072
	CRR073304	Juvenile bud 2	33.641
	CRR073305	Juvenile bud 3	34.908
	CRR073306	Third green 1	16.958
	CRR073307	Third green 2	18.320
	CRR073308	Third green 3	16.984
	CRR073309	Second white 1	27.615
	CRR073310	Second white 2	26.839
	CRR073311	Second white 3	24.809
	CRR073312	Silver flowering 1	22.448
	CRR073313	Silver flowering 2	11.096
	CRR073314	Silver flowering 3	13.644
	CRR073315	Gold flowering 1	7.566
	CRR073316	Gold flowering 2	11.461
	CRR073317	Gold flowering 3	9.679
	CRR073318	Tawny withering 1	37.444
	CRR073319	Tawny withering 2	23.584
	CRR073320	Tawny withering 3	40.308