Gene detail

Detail information of GWHGAAZE013638

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002527920.1	2.6733E-177	conserved hypothetical protein [Ricinus communis]
Swissprot	tr\|Q94C27\|FB84_ARATH	6E-146	F-box protein At1g70590
trEMBL	tr\|B9SPK1\|B9SPK1_RICCO	1E-177	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF34477.1}
TAIR10	AT1G70590.1	8E-118	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105747011	105749835	+
GWHAAZE00000003	mRNA	105747011	105749835	+
GWHAAZE00000003	exon	105747011	105747548	+
GWHAAZE00000003	exon	105748342	105748475	+
GWHAAZE00000003	exon	105749050	105749232	+
GWHAAZE00000003	exon	105749437	105749835	+
GWHAAZE00000003	CDS	105747011	105747548	+
GWHAAZE00000003	CDS	105748342	105748475	+
GWHAAZE00000003	CDS	105749050	105749232	+
GWHAAZE00000003	CDS	105749437	105749604	+
GWHAAZE00000003	three_prime_UTR	105749605	105749835	+

Transcript Sequence
>GWHTAAZE013652 ATGAATCAGAGAACCTGGCCTTACCGATCGGACGGTTCTCACTTCGTTTCCCTTCCATTTCCCTGCAACACCCACCACCGCCAAAACAATTGTTATGGCTTCTCAAAACCCAACGTCCGTCAGTTTCGCTTCGGTGAATCTACCTCATCACGCTCCAGTCATCATCGTGATTTCTCCATGTTACCAAACGATGTTTTGACAAAAATTGCAGCCAATTTCACGCTCCCAAACCTCCAATCGGCTTCCTTGGTCTGCAAATCATGGAGGGACGCGCTTCGCCCCCTCAGAGAGGCCATGCTGTTCCTCCGGTGGGGGAAGCGGTTCAAGCACGGCCGCGCCGGTCTCTGCCCTAATCTTCACAAAGCTCTCGATTCATTTCTGAAAGGTGCGGCGCGTGGCTCCACCCTTGCTATGGTAGATGCTGGTCTTGTTTACTGGGAAATGGGGAACAAGGAGAAGGGGATTGAGCTTTATCGGAAGGCGGCCGAGCTCGGAGATCCAGCTGGTCAGTTGAATTTGGGGATTTCCTACTTGCAAGCTGAACCTCCAAATGTGAAGGAGGCTATTAAATGGTTACATCAAGCTTCTGTTGCTGGCAATGTTCGCGCTCAGTACCAACTTGCTCTGTGCTTACACCAAGGTCGTGGGGTGGACCGAAATCTGCCAGAAGCCGCTAGATGGTATCTGAGAGCTGCAGAAGGTGGGTATGTGCGTGCTATGTATAATGCTTCCCTGTGCTACTCATTCGGTGAGGGTTTAGTCCGGAGTCATCGACAAGCAAGGAAATGGATGAAGCAAGCGGCTGATCGTGGTCACAGTAAAGCTCAGTTTGAGCATGGGCTTGGTCTTTTTTCTGAAGGAGAGATGATGAAGGCAGTAGTATACCTGGAGCTTGCCACGCGGGCAGGGGAGACGGCAGCAGCTCGGGTGAGGAATGTTATAGTACAACAGCTGTCAGCTGCTTCTCGTGACCGAGCTATGCTCCTTGCTAGCAACTGGCGTGCCTTGCCTTCACCTCGTTGAGTTTGTCCTCCTCATGGTCTTTTATACTTTTGAACGTTCTTCATCTCCTCTTCCTTGTTTTAGCCCTACTATGCAAGTGTTGTGTATAATTGTAATTGCAATATGATGAGTAATTGGTGCTTCTAAGATCTATATATTTGATGATATATTGTGTATCTTGTCTATGTATTACACGATGAAGATTCGCTCTAAATGCTCTTGTTTAACAACTAATATTGGATTTGATGTTTA

Network for GWHGAAZE013638

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	57	93	6.00E-06
PF08238.13	Sel1	138	166	0.006
PF08238.13	Sel1	168	196	0.061
PF08238.13	Sel1	202	236	1.40E-08
PF08238.13	Sel1	238	272	1.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.803
	SRR3591706	second leaf	57.030
	SRR3591707	mature leaf	117.980
	SRR3591708	Shoot apex	44.504
	SRR3591709	Stem	68.418
	SRR3591710	White floral bud	29.864
	SRR3591711	White flower	28.364
	SRR3591712	Green floral bud	20.584
	SRR3591713	Yellow flower	25.351
SRP173429	SRR8316895	Juvenile bud stage	40.999
	SRR8316896	Juvenile bud stage	53.812
	SRR8316897	Juvenile bud stage	23.588
	SRR8316894	Third green stage	16.185
	SRR8316900	Third green stage	36.825
	SRR8316901	Third green stage	43.732
	SRR8316898	Complete white stage	29.798
	SRR8316899	Complete white stage	71.748
	SRR8316903	Complete white stage	42.706
	SRR8316902	Silver flowering stage	27.290
	SRR8316904	Silver flowering stage	31.626
	SRR8316905	Silver flowering stage	18.780
	SRR8316906	Gold flowering stage	56.286
	SRR8316907	Gold flowering stage	56.107
	SRR8316908	Gold flowering stage	74.008
SRP132670	SRR6706286	Control	50.132
	SRR6706287	Light intensity 50%	51.689
	SRR6706288	Light intensity 20%	50.316
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.403
	CNS0095593	Slightly white alabastrum(diploid) 2	56.264
	CNS0095594	Slightly white alabastrum(diploid) 3	45.625
	CNS0095595	Whole white alabastrum(diploid) 2	41.286
	CNS0095596	Whole white alabastrum(diploid) 3	33.570
	CNS0095597	Whole white alabastrum(diploid) 4	41.231
	CNS0095598	Silvery flower (diploied) 1	84.515
	CNS0095599	Silvery flower (diploied) 2	90.742
	CNS0095600	Silvery flower (diploied) 3	89.968
	CNS0095601	Golden flower (diploid) 1	83.274
	CNS0095602	Golden flower (diploid) 2	81.080
	CNS0095603	Golden flower (diploid) 3	83.595
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.860
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.031
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.054
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.517
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.720
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.367
	CNS0095610	Silvery flower (tetraploid) 1	91.004
	CNS0095611	Silvery flower (tetraploid) 2	106.707
	CNS0095612	Silvery flower (tetraploid) 3	84.311
	CNS0095613	Golden flower (tetraploid) 1	67.287
	CNS0095614	Golden flower (tetraploid) 2	80.082
	CNS0095615	Golden flower (tetraploid) 3	69.238
CRA001975	CRR073297	Stem 1	41.923
	CRR073298	Stem 2	35.819
	CRR073299	Stem 3	50.134
	CRR073300	Leaf 1	45.212
	CRR073301	Leaf 2	52.001
	CRR073302	Leaf 3	41.125
	CRR073303	Juvenile bud 1	41.486
	CRR073304	Juvenile bud 2	41.641
	CRR073305	Juvenile bud 3	64.558
	CRR073306	Third green 1	68.049
	CRR073307	Third green 2	62.711
	CRR073308	Third green 3	61.715
	CRR073309	Second white 1	61.311
	CRR073310	Second white 2	59.320
	CRR073311	Second white 3	51.758
	CRR073312	Silver flowering 1	51.345
	CRR073313	Silver flowering 2	50.143
	CRR073314	Silver flowering 3	48.500
	CRR073315	Gold flowering 1	44.366
	CRR073316	Gold flowering 2	58.310
	CRR073317	Gold flowering 3	46.193
	CRR073318	Tawny withering 1	68.046
	CRR073319	Tawny withering 2	70.536
	CRR073320	Tawny withering 3	54.438