Detail information of GWHGAAZE013669


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009599796.14.5262E-173PREDICTED: E3 ubiquitin-protein ligase TRAF7 [Nicotiana tomentosiformis]
Swissprottr|B7FNU7|LIS1_PHATC1E-12Lissencephaly-1 homolog {ECO:0000255|HAMAP-Rule:MF_03141}
trEMBLtr|K4BYA9|K4BYA9_SOLLC4E-171Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g013880.1.1}
TAIR10AT1G24530.11E-112Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene106209542106210756-
GWHAAZE00000003mRNA106209542106210756-
GWHAAZE00000003exon106209542106210756-
GWHAAZE00000003CDS106209542106210756-
Transcript Sequence

Network for GWHGAAZE013669

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402162510.0015
PF00400.33WD402632970.00064
PF00400.33WD403113410.00018
PF00400.33WD403503940.003
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf72.857
SRR3591706second leaf18.996
SRR3591707mature leaf21.353
SRR3591708Shoot apex26.226
SRR3591709Stem63.153
SRR3591710White floral bud35.908
SRR3591711White flower44.489
SRR3591712Green floral bud22.237
SRR3591713Yellow flower4.827
SRP173429 SRR8316895Juvenile bud stage 36.064
SRR8316896Juvenile bud stage 24.267
SRR8316897Juvenile bud stage 46.785
SRR8316894Third green stage 7.148
SRR8316900Third green stage 6.684
SRR8316901Third green stage 14.740
SRR8316898Complete white stage 0.474
SRR8316899Complete white stage 40.203
SRR8316903Complete white stage 0.361
SRR8316902Silver flowering stage0.072
SRR8316904Silver flowering stage0.057
SRR8316905Silver flowering stage0.224
SRR8316906Gold flowering stage 0.423
SRR8316907Gold flowering stage 0.137
SRR8316908Gold flowering stage 2.378
SRP132670SRR6706286Control2.251
SRR6706287Light intensity 50%3.166
SRR6706288Light intensity 20%1.569
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.160
CNS0095593Slightly white alabastrum(diploid) 272.248
CNS0095594Slightly white alabastrum(diploid) 373.290
CNS0095595Whole white alabastrum(diploid) 275.856
CNS0095596Whole white alabastrum(diploid) 32.553
CNS0095597Whole white alabastrum(diploid) 439.261
CNS0095598Silvery flower (diploied) 1166.033
CNS0095599Silvery flower (diploied) 2150.747
CNS0095600Silvery flower (diploied) 346.349
CNS0095601Golden flower (diploid) 1142.698
CNS0095602Golden flower (diploid) 2103.568
CNS0095603Golden flower (diploid) 399.398
CNS0095604Slightly white alabastrum(tetraploid) 11.507
CNS0095605Slightly white alabastrum(tetraploid) 20.450
CNS0095606Slightly white alabastrum(tetraploid) 31.225
CNS0095607Whole white alabastrum(tetraploid) 11.131
CNS0095608Whole white alabastrum(tetraploid) 20.107
CNS0095609Whole white alabastrum(tetraploid) 30.339
CNS0095610Silvery flower (tetraploid) 10.804
CNS0095611Silvery flower (tetraploid) 21.296
CNS0095612Silvery flower (tetraploid) 346.238
CNS0095613Golden flower (tetraploid) 10.456
CNS0095614Golden flower (tetraploid) 20.182
CNS0095615Golden flower (tetraploid) 30.517
CRA001975CRR073297Stem 136.331
CRR073298Stem 233.810
CRR073299Stem 344.265
CRR073300Leaf 155.913
CRR073301Leaf 273.825
CRR073302Leaf 330.757
CRR073303Juvenile bud 143.364
CRR073304Juvenile bud 224.962
CRR073305Juvenile bud 3109.095
CRR073306Third green 127.344
CRR073307Third green 225.128
CRR073308Third green 321.834
CRR073309Second white 142.827
CRR073310Second white 233.995
CRR073311Second white 340.996
CRR073312Silver flowering 162.249
CRR073313Silver flowering 257.935
CRR073314Silver flowering 348.515
CRR073315Gold flowering 145.313
CRR073316Gold flowering 279.503
CRR073317Gold flowering 398.761
CRR073318Tawny withering 112.384
CRR073319Tawny withering 249.751
CRR073320Tawny withering 38.647