Detail information of GWHGAAZE013682


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13279.11.756E-150unnamed protein product [Coffea canephora]
trEMBLtr|A0A068UYH2|A0A068UYH2_COFCA7E-151Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313|EMBL:CDP13279.1}
TAIR10AT1G24440.17E-90RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene106381921106384121-
GWHAAZE00000003mRNA106381921106384121-
GWHAAZE00000003exon106381921106382131-
GWHAAZE00000003exon106382253106382487-
GWHAAZE00000003exon106382608106382674-
GWHAAZE00000003exon106382939106383101-
GWHAAZE00000003exon106384027106384121-
GWHAAZE00000003CDS106384027106384121-
GWHAAZE00000003CDS106382939106383101-
GWHAAZE00000003CDS106382608106382674-
GWHAAZE00000003CDS106382253106382487-
GWHAAZE00000003CDS106381921106382131-
Transcript Sequence

Network for GWHGAAZE013682

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21581982.60E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.454
SRR3591706second leaf4.910
SRR3591707mature leaf6.402
SRR3591708Shoot apex10.810
SRR3591709Stem23.844
SRR3591710White floral bud14.733
SRR3591711White flower22.906
SRR3591712Green floral bud5.984
SRR3591713Yellow flower59.010
SRP173429 SRR8316895Juvenile bud stage 4.260
SRR8316896Juvenile bud stage 7.232
SRR8316897Juvenile bud stage 2.573
SRR8316894Third green stage 3.681
SRR8316900Third green stage 8.462
SRR8316901Third green stage 6.083
SRR8316898Complete white stage 7.114
SRR8316899Complete white stage 9.276
SRR8316903Complete white stage 10.562
SRR8316902Silver flowering stage17.437
SRR8316904Silver flowering stage22.305
SRR8316905Silver flowering stage14.536
SRR8316906Gold flowering stage 66.680
SRR8316907Gold flowering stage 56.659
SRR8316908Gold flowering stage 61.842
SRP132670SRR6706286Control5.433
SRR6706287Light intensity 50%4.921
SRR6706288Light intensity 20%3.909
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.369
CNS0095593Slightly white alabastrum(diploid) 27.142
CNS0095594Slightly white alabastrum(diploid) 37.259
CNS0095595Whole white alabastrum(diploid) 25.656
CNS0095596Whole white alabastrum(diploid) 34.120
CNS0095597Whole white alabastrum(diploid) 45.689
CNS0095598Silvery flower (diploied) 118.679
CNS0095599Silvery flower (diploied) 214.460
CNS0095600Silvery flower (diploied) 334.252
CNS0095601Golden flower (diploid) 137.041
CNS0095602Golden flower (diploid) 244.833
CNS0095603Golden flower (diploid) 340.777
CNS0095604Slightly white alabastrum(tetraploid) 16.322
CNS0095605Slightly white alabastrum(tetraploid) 23.826
CNS0095606Slightly white alabastrum(tetraploid) 35.912
CNS0095607Whole white alabastrum(tetraploid) 15.041
CNS0095608Whole white alabastrum(tetraploid) 22.953
CNS0095609Whole white alabastrum(tetraploid) 35.148
CNS0095610Silvery flower (tetraploid) 130.270
CNS0095611Silvery flower (tetraploid) 224.551
CNS0095612Silvery flower (tetraploid) 325.001
CNS0095613Golden flower (tetraploid) 145.234
CNS0095614Golden flower (tetraploid) 240.621
CNS0095615Golden flower (tetraploid) 384.519
CRA001975CRR073297Stem 16.378
CRR073298Stem 210.573
CRR073299Stem 37.192
CRR073300Leaf 17.633
CRR073301Leaf 25.635
CRR073302Leaf 34.906
CRR073303Juvenile bud 16.117
CRR073304Juvenile bud 25.431
CRR073305Juvenile bud 35.900
CRR073306Third green 118.673
CRR073307Third green 214.780
CRR073308Third green 314.673
CRR073309Second white 125.056
CRR073310Second white 223.635
CRR073311Second white 322.174
CRR073312Silver flowering 130.883
CRR073313Silver flowering 226.065
CRR073314Silver flowering 321.777
CRR073315Gold flowering 13.413
CRR073316Gold flowering 212.055
CRR073317Gold flowering 36.462
CRR073318Tawny withering 121.227
CRR073319Tawny withering 214.909
CRR073320Tawny withering 314.941