Detail information of GWHGAAZE013684


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006438148.13.87168E-46hypothetical protein CICLE_v10032536mg [Citrus clementina]
trEMBLtr|V4SU56|V4SU56_9ROSI1E-46Uncharacterized protein {ECO:0000313|EMBL:ESR51388.1}
TAIR10AT1G13195.11E-26RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene106397558106398058+
GWHAAZE00000003mRNA106397558106398058+
GWHAAZE00000003exon106397558106397628+
GWHAAZE00000003exon106397851106398058+
GWHAAZE00000003CDS106397558106397628+
GWHAAZE00000003CDS106397851106398058+
Transcript Sequence

Network for GWHGAAZE013684

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14447.7Prok-RING_45394.30E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.355
SRR3591706second leaf19.582
SRR3591707mature leaf13.985
SRR3591708Shoot apex52.532
SRR3591709Stem45.669
SRR3591710White floral bud17.165
SRR3591711White flower24.438
SRR3591712Green floral bud11.035
SRR3591713Yellow flower40.918
SRP173429 SRR8316895Juvenile bud stage 12.075
SRR8316896Juvenile bud stage 22.964
SRR8316897Juvenile bud stage 3.664
SRR8316894Third green stage 6.983
SRR8316900Third green stage 18.921
SRR8316901Third green stage 16.237
SRR8316898Complete white stage 12.490
SRR8316899Complete white stage 25.837
SRR8316903Complete white stage 14.451
SRR8316902Silver flowering stage22.640
SRR8316904Silver flowering stage22.788
SRR8316905Silver flowering stage7.867
SRR8316906Gold flowering stage 53.558
SRR8316907Gold flowering stage 42.722
SRR8316908Gold flowering stage 33.033
SRP132670SRR6706286Control17.030
SRR6706287Light intensity 50%11.795
SRR6706288Light intensity 20%12.145
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.975
CNS0095593Slightly white alabastrum(diploid) 229.602
CNS0095594Slightly white alabastrum(diploid) 320.330
CNS0095595Whole white alabastrum(diploid) 220.576
CNS0095596Whole white alabastrum(diploid) 319.173
CNS0095597Whole white alabastrum(diploid) 419.266
CNS0095598Silvery flower (diploied) 139.469
CNS0095599Silvery flower (diploied) 237.557
CNS0095600Silvery flower (diploied) 338.672
CNS0095601Golden flower (diploid) 161.862
CNS0095602Golden flower (diploid) 245.161
CNS0095603Golden flower (diploid) 338.327
CNS0095604Slightly white alabastrum(tetraploid) 110.069
CNS0095605Slightly white alabastrum(tetraploid) 210.715
CNS0095606Slightly white alabastrum(tetraploid) 313.947
CNS0095607Whole white alabastrum(tetraploid) 18.180
CNS0095608Whole white alabastrum(tetraploid) 25.715
CNS0095609Whole white alabastrum(tetraploid) 36.186
CNS0095610Silvery flower (tetraploid) 123.977
CNS0095611Silvery flower (tetraploid) 224.193
CNS0095612Silvery flower (tetraploid) 319.699
CNS0095613Golden flower (tetraploid) 124.753
CNS0095614Golden flower (tetraploid) 224.605
CNS0095615Golden flower (tetraploid) 352.705
CRA001975CRR073297Stem 173.887
CRR073298Stem 265.398
CRR073299Stem 347.629
CRR073300Leaf 141.418
CRR073301Leaf 254.662
CRR073302Leaf 341.229
CRR073303Juvenile bud 136.874
CRR073304Juvenile bud 218.166
CRR073305Juvenile bud 319.894
CRR073306Third green 118.833
CRR073307Third green 211.563
CRR073308Third green 317.451
CRR073309Second white 118.925
CRR073310Second white 224.400
CRR073311Second white 325.113
CRR073312Silver flowering 125.246
CRR073313Silver flowering 221.821
CRR073314Silver flowering 319.274
CRR073315Gold flowering 140.424
CRR073316Gold flowering 252.131
CRR073317Gold flowering 330.453
CRR073318Tawny withering 158.280
CRR073319Tawny withering 243.640
CRR073320Tawny withering 345.819