Gene detail

Detail information of GWHGAAZE013685

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13286.1	3.89294E-82	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q50EX6\|ODO1_PETHY	4E-69	Protein ODORANT1
trEMBL	tr\|A0A068UY07\|A0A068UY07_COFCA	1E-82	Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313\|EMBL:CDP13286.1}
TAIR10	AT5G14340.1	7E-62	myb domain protein 40

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106402403	106403396	-
GWHAAZE00000003	mRNA	106402403	106403396	-
GWHAAZE00000003	exon	106403243	106403396	-
GWHAAZE00000003	exon	106402867	106402996	-
GWHAAZE00000003	exon	106402403	106402748	-
GWHAAZE00000003	five_prime_UTR	106403376	106403396	-
GWHAAZE00000003	CDS	106403243	106403375	-
GWHAAZE00000003	CDS	106402867	106402996	-
GWHAAZE00000003	CDS	106402403	106402748	-

Transcript Sequence
>GWHTAAZE013699 TGAAGCTTTAATAATTTAAAAATGGGAAGACAGCCATGTCGTGATAAGCTTGGATTGAAGAGAGGTCCGTGGACTATTGAAGAAGACAATAAGCTCATGAATTTTATCCTTGGCAACGGCATCCAATGCTGGAGAAATGTTCCTAAACTTGCAGGTTTGCAAAGATGTGGTAAGAGTTGTAGATTAAGATGGATTAATTATCTTAGGCCAGATCTCAAGAGAGGAGCTTTATCAGAAGCAGAGGAAGATATGATCATTCAACTCCATTCTCTTTTAGGCAATAGGTGGTCCAAGATAGCAGCTCATTTCCCGGGGCGTACAGATAATGAAATAAAGAACCATTGGAACACAAGAATAAAGAAGAAGTTGAAGCTCCTTGGTCTAGACCCTATGACTCACAAACCCATCGTTGAAGTGTATGAGAATTTTGACGCAAAAGAGAAAAGAACCGTGCAGTGTAAAACCGAGCTTGAGTTGCAGAATAATGATTCTGTTTTTCAAGATGAAGATTATCGAGTGTCACAAAGGGAAGGGACATTAAAATCGGGCTTAGAGTTAGATGAGGAAACCTGCAGTATAGCTCACATGAATGAAATGCCACCAAGCTTGTGGGTGGAACTCGATTGTTAA

Network for GWHGAAZE013685

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	7.00E-11
PF00249.32	Myb_DNA-binding	67	110	1.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.058
	SRR3591706	second leaf	1.400
	SRR3591707	mature leaf	0.285
	SRR3591708	Shoot apex	11.394
	SRR3591709	Stem	0.850
	SRR3591710	White floral bud	1.446
	SRR3591711	White flower	1.737
	SRR3591712	Green floral bud	0.335
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.989
	SRR8316896	Juvenile bud stage	0.809
	SRR8316897	Juvenile bud stage	0.255
	SRR8316894	Third green stage	0.364
	SRR8316900	Third green stage	0.467
	SRR8316901	Third green stage	0.240
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.682
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.411
	SRR8316905	Silver flowering stage	0.101
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.208
	SRR8316908	Gold flowering stage	0.075
SRP132670	SRR6706286	Control	0.090
	SRR6706287	Light intensity 50%	0.067
	SRR6706288	Light intensity 20%	0.113
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.715
	CNS0095593	Slightly white alabastrum(diploid) 2	1.992
	CNS0095594	Slightly white alabastrum(diploid) 3	1.518
	CNS0095595	Whole white alabastrum(diploid) 2	1.025
	CNS0095596	Whole white alabastrum(diploid) 3	0.130
	CNS0095597	Whole white alabastrum(diploid) 4	1.217
	CNS0095598	Silvery flower (diploied) 1	2.926
	CNS0095599	Silvery flower (diploied) 2	5.150
	CNS0095600	Silvery flower (diploied) 3	0.274
	CNS0095601	Golden flower (diploid) 1	1.223
	CNS0095602	Golden flower (diploid) 2	0.113
	CNS0095603	Golden flower (diploid) 3	0.296
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.972
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.189
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.120
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.749
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.892
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.249
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	1.055
	CNS0095612	Silvery flower (tetraploid) 3	1.445
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.162
	CNS0095615	Golden flower (tetraploid) 3	0.280
CRA001975	CRR073297	Stem 1	0.241
	CRR073298	Stem 2	0.078
	CRR073299	Stem 3	0.280
	CRR073300	Leaf 1	0.073
	CRR073301	Leaf 2	0.263
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.019
	CRR073304	Juvenile bud 2	0.117
	CRR073305	Juvenile bud 3	0.069
	CRR073306	Third green 1	0.200
	CRR073307	Third green 2	0.317
	CRR073308	Third green 3	0.345
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.236
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.180
	CRR073319	Tawny withering 2	0.295
	CRR073320	Tawny withering 3	0.105