Gene detail

Detail information of GWHGAAZE013691

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AID52923.1	0	cytosolic glyceraldehyde-3-phosphate dehydrogenase [Carthamus tinctorius]
Swissprot	tr\|Q9FX54\|G3PC2_ARATH	0	Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic
trEMBL	tr\|A0A068EQ30\|A0A068EQ30_CARTI	0	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256\|RuleBase:RU361160}
TAIR10	AT1G13440.1	7E-176	glyceraldehyde-3-phosphate dehydrogenase C2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106466664	106469479	+
GWHAAZE00000003	mRNA	106466664	106469479	+
GWHAAZE00000003	exon	106466664	106466930	+
GWHAAZE00000003	exon	106467015	106467047	+
GWHAAZE00000003	exon	106467202	106467302	+
GWHAAZE00000003	exon	106467446	106467561	+
GWHAAZE00000003	exon	106467660	106467759	+
GWHAAZE00000003	exon	106468029	106468175	+
GWHAAZE00000003	exon	106468289	106468349	+
GWHAAZE00000003	exon	106468440	106468537	+
GWHAAZE00000003	exon	106468811	106468953	+
GWHAAZE00000003	exon	106469079	106469162	+
GWHAAZE00000003	exon	106469248	106469337	+
GWHAAZE00000003	exon	106469437	106469479	+
GWHAAZE00000003	five_prime_UTR	106466664	106466926	+
GWHAAZE00000003	CDS	106466927	106466930	+
GWHAAZE00000003	CDS	106467015	106467047	+
GWHAAZE00000003	CDS	106467202	106467302	+
GWHAAZE00000003	CDS	106467446	106467561	+
GWHAAZE00000003	CDS	106467660	106467759	+
GWHAAZE00000003	CDS	106468029	106468175	+
GWHAAZE00000003	CDS	106468289	106468349	+
GWHAAZE00000003	CDS	106468440	106468537	+
GWHAAZE00000003	CDS	106468811	106468953	+
GWHAAZE00000003	CDS	106469079	106469162	+
GWHAAZE00000003	CDS	106469248	106469337	+
GWHAAZE00000003	CDS	106469437	106469479	+

Transcript Sequence
>GWHTAAZE013705 TCATACAGATTTGTAGTTAATGGTATGAAAGTTCTTTCTTTTTCTCCAAGACAGAGCGTAAAAACTGCAAATTTCTCGTGACCCCACCTACCCGGTTTCCGCCTTCGACTAATCCGCCCCCCTCCTGCCCTTTAAATAAATAAAGCCCCAATAATCCGCTCACAGTCACACAAACCCCTAAATCTACTATCCCACAAAACCCCTCGTCTCTCTTCTCCTAAACTAAATTCATCTCCCACTCTCTCTCTCAAAAGCATCATATCATGGGTTCTGATAAGAAGATCAAGATCGGAATCAACGGATTCGGTAGGATTGGTCGTTTAGTTGCTAGAGTTGCTCTCCAGAGAGACGATGTTGAACTTGTTGCCGTTAACGATCCGTTCATCACCACTGATTACATGACATATATGTTCAAGTATGATAGTGTTCATGGCCAGTGGAAGCATCACGAGCTTAAGGTTAAGGATGAGAAGACCCTTCTCTTTGGCGACAAGCCAGTTACTGTTTTTGGAATCAGGAACCCAGAAGAGATCCCATGGGGCCAAGCAGGAGCTGACTTTGTGGTGGAGTCTACTGGTGTTTTCACCGACAAGGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAGGTTGTCATTTCTGCTCCTAGTAAAGATGCTCCCATGTTTGTTGTGGGTGTCAATGAGAAGGAATACAAGTCTGACCTTGACATTGTCTCCAACGCTAGTTGCACTACCAACTGTCTTGCTCCCTTGGCCAAGGTCATCAATGACAGGTTTGGCATTGTTGAGGGTCTTATGACCACTGTCCACTCTATTACCGCCACACAAAAGACTGTTGATGGGCCATCAAGCAAGGATTGGAGAGGTGGAAGGGCTGCTTCTTTTAACATCATTCCAAGCAGCACTGGAGCCGCCAAGGCTGTTGGCAAAGTACTTCCTTCACTAAATGGTAAATTGACCGGAATGTCCTTCCGAGTTCCGACCGTCGACGTTTCAGTTGTTGATCTTACTGTAAGGCTTGAGAAGAAGGCTACCTATGAGCAAATCAAGGCTGCTATCAAGGAGGAGTCAGAGGGCAAGCTCAAGGGTATCTTGGGTTACACCGAAGATGATGTTGTATCCACAGACTTTGTTGGTGACAGCAGGTCAAGCATCTTTGATGCCAAGGCCGGGATTGCTTTGAATGAGAACTTTGTGAAACTTGTCTCTTGGTACGACAATGAATGGGGATACAGCTCCCGTGTGATTGATTTGATTTGCCACATGGCCTCTGTCTAA

Network for GWHGAAZE013691

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00044.25	Gp_dh_N	7	110	3.40E-34
PF02800.21	Gp_dh_C	162	319	1.10E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00134	GAPDH, gapA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Carbon fixation in photosynthetic organisms	map00710
		HIF-1 signaling pathway	map04066

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006006	biological_process	glucose metabolic process
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661	molecular_function	NADP binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	746.969
	SRR3591706	second leaf	291.412
	SRR3591707	mature leaf	178.113
	SRR3591708	Shoot apex	437.667
	SRR3591709	Stem	425.312
	SRR3591710	White floral bud	430.977
	SRR3591711	White flower	998.470
	SRR3591712	Green floral bud	621.379
	SRR3591713	Yellow flower	868.448
SRP173429	SRR8316895	Juvenile bud stage	290.128
	SRR8316896	Juvenile bud stage	377.211
	SRR8316897	Juvenile bud stage	232.791
	SRR8316894	Third green stage	233.957
	SRR8316900	Third green stage	840.221
	SRR8316901	Third green stage	693.658
	SRR8316898	Complete white stage	223.643
	SRR8316899	Complete white stage	587.502
	SRR8316903	Complete white stage	318.823
	SRR8316902	Silver flowering stage	296.372
	SRR8316904	Silver flowering stage	337.092
	SRR8316905	Silver flowering stage	179.946
	SRR8316906	Gold flowering stage	695.935
	SRR8316907	Gold flowering stage	807.988
	SRR8316908	Gold flowering stage	1023.337
SRP132670	SRR6706286	Control	441.837
	SRR6706287	Light intensity 50%	461.334
	SRR6706288	Light intensity 20%	530.660
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	310.805
	CNS0095593	Slightly white alabastrum(diploid) 2	397.667
	CNS0095594	Slightly white alabastrum(diploid) 3	269.975
	CNS0095595	Whole white alabastrum(diploid) 2	382.613
	CNS0095596	Whole white alabastrum(diploid) 3	419.272
	CNS0095597	Whole white alabastrum(diploid) 4	320.684
	CNS0095598	Silvery flower (diploied) 1	280.318
	CNS0095599	Silvery flower (diploied) 2	302.618
	CNS0095600	Silvery flower (diploied) 3	566.617
	CNS0095601	Golden flower (diploid) 1	228.983
	CNS0095602	Golden flower (diploid) 2	424.323
	CNS0095603	Golden flower (diploid) 3	408.338
	CNS0095604	Slightly white alabastrum(tetraploid) 1	416.588
	CNS0095605	Slightly white alabastrum(tetraploid) 2	336.679
	CNS0095606	Slightly white alabastrum(tetraploid) 3	667.145
	CNS0095607	Whole white alabastrum(tetraploid) 1	233.086
	CNS0095608	Whole white alabastrum(tetraploid) 2	248.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	611.766
	CNS0095610	Silvery flower (tetraploid) 1	733.649
	CNS0095611	Silvery flower (tetraploid) 2	619.036
	CNS0095612	Silvery flower (tetraploid) 3	425.253
	CNS0095613	Golden flower (tetraploid) 1	326.341
	CNS0095614	Golden flower (tetraploid) 2	454.203
	CNS0095615	Golden flower (tetraploid) 3	309.113
CRA001975	CRR073297	Stem 1	547.263
	CRR073298	Stem 2	542.036
	CRR073299	Stem 3	746.864
	CRR073300	Leaf 1	815.976
	CRR073301	Leaf 2	809.871
	CRR073302	Leaf 3	1274.027
	CRR073303	Juvenile bud 1	1400.476
	CRR073304	Juvenile bud 2	1150.871
	CRR073305	Juvenile bud 3	1151.847
	CRR073306	Third green 1	568.936
	CRR073307	Third green 2	498.150
	CRR073308	Third green 3	437.993
	CRR073309	Second white 1	1161.154
	CRR073310	Second white 2	681.493
	CRR073311	Second white 3	473.505
	CRR073312	Silver flowering 1	525.809
	CRR073313	Silver flowering 2	741.118
	CRR073314	Silver flowering 3	553.855
	CRR073315	Gold flowering 1	284.784
	CRR073316	Gold flowering 2	332.368
	CRR073317	Gold flowering 3	351.769
	CRR073318	Tawny withering 1	691.308
	CRR073319	Tawny withering 2	575.176
	CRR073320	Tawny withering 3	583.781