Gene detail

Detail information of GWHGAAZE013699

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010250787.1	0	PREDICTED: uncharacterized protein LOC104592935 [Nelumbo nucifera]
trEMBL	tr\|B9HL86\|B9HL86_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE90001.2}
TAIR10	AT3G01810.3	5E-147	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106577212	106581554	+
GWHAAZE00000003	mRNA	106577212	106581554	+
GWHAAZE00000003	exon	106577212	106577892	+
GWHAAZE00000003	exon	106578105	106579165	+
GWHAAZE00000003	exon	106579353	106579638	+
GWHAAZE00000003	exon	106579747	106579965	+
GWHAAZE00000003	exon	106580328	106580501	+
GWHAAZE00000003	exon	106580706	106580903	+
GWHAAZE00000003	exon	106581010	106581123	+
GWHAAZE00000003	exon	106581225	106581554	+
GWHAAZE00000003	CDS	106577212	106577892	+
GWHAAZE00000003	CDS	106578105	106579165	+
GWHAAZE00000003	CDS	106579353	106579638	+
GWHAAZE00000003	CDS	106579747	106579965	+
GWHAAZE00000003	CDS	106580328	106580501	+
GWHAAZE00000003	CDS	106580706	106580903	+
GWHAAZE00000003	CDS	106581010	106581123	+
GWHAAZE00000003	CDS	106581225	106581554	+

Transcript Sequence
>GWHTAAZE013713 ATGGTTCTTGGGCTGAGATCAAGGCACCGAAAAGGCGCTTCTGTTCAAGTTGATTATCTTGTTCATGTAGGGGAGATCAAACCATGGCCCCCATCTCAGTCTCTTAGATCTGTTCAATCTGTGTTGCTGCAATGGGAAAATGGTGATCAGAATTCTGGTTCCCTTACTTGTGGTGTTGGGGATACCAAAATTGAATTTAATGAGTCCCTTACACTTCCATTGACATTAAGTAGAGAAAAAAGGGCCCGTGACAAGTTTCAGAAGAACTGCTTGGAGTTCAATTTGTACGAACCTCGAAAAGACAAGGCACCTAAAGGTCAACTCTTGGGGACAGCCATAATAAATCTTGCAGAATATGGGATTATTGAGGAGAATTTAACCATAAGTGCTCCACTGAACTGCAAGAAGAGTTCTAAGAATACAGTGCAACCGATTCTGTTTGTTAAAATACAGCCGATTGATAAGGACAGCTCCAACTCGTCTCCCAAGGGAGGCTTATCAAAAGAAGCATCGATAGACAAGGATGGACAGGATTATGTTTCTGAACTTATGAATGAAGAAAATGACGATGAATCTGAGATAGCTTCTTTTACTGATGATGATGTAACCTCACATTCATCACGGACCATTGCTTTTTCCGCTCTTGAGGGATTGGGGGCTTCACCATATCGAAATGAGAAGGAGGAATTGGAAGTAGCTATGGAGAGCACAGTAAAGGGTAATGGGGAGCTGACTCGACCCTTGAACCCAGAATTTTCAACCCCGGTAGTCAATCCAGGGACTGAATTACTTGACCAGTCAGATAGGAGTGCACAGCTTTTTTCTTCTATTGAATTATACTCTGATTTAAGGAATCCCGATAATAGTCGGGAAATTATGAGAGAGGATTTTCAGAAAGAGATTGGAATAACTGAAGGACATGCTCAGATATCTGACAGCGATGAACTCGTTGATACAGTTGAAGAAAAAGTTGCATCCTCTAATACACATATTCAGGTGGGTGTCAACTCTGTTGCTAGCCATGAAGAAACTCAACCCAATAGAGATGCTGCCACCCAAGCCTCTCAATGGAGGAAGAACGGCCAAGTGAAGGCTATAGCTATTAGTGATTTGTATGTTGGTCCTGGGGACGGCGAAGAGAAAAGAGAAAGGGAAGAAATTGAACGGGATGAACGGATCTTGGAGGACATGAGAGCTTCGGTAAATAAACAAGCTGGTAAATTTTCACAAGCTGCTATCAGGAAGCAAGGCGCATTAAGGAGTAATACTCTTGCATCCGATAGGAGAGCTCTGGGAGTTCAGGGAAGTACCACAAGCAATAATAAATTAAAGCACATGAAGTCTGTTCAGTTACCACCTCACTTGTCCAAGGCCAATGGGATTCCCGAAAATATTCATAATATGGACAAGGTGAAGAAAATAGACCATATTACAGGTAATGTGGCAATTGAGAATAAAGAACCACAAAATGGGTCTTCTGGTAATAAAAATGAATGGGAATCTAGAGTTGAGATGCTTGAGGAAGAGTTGAGTGAAGCTGCAGCCATTGAGGTTGGGCTTTATTCCATAGTTGCGGAGCATGGAAGTTCAATAAACAAGGTTCATGCTCCAGCTCGGCGCCTCTCTAGATTCTATCTTCATGCTTGCAAAGCAAGTTCCAAAGATAAAAGGGCAAGTGCAGCTAGAGCTACTGTCTCGGGCTTAGTTTTGGTTTCTAAAGCATGTGGAAATGATGTTCCCAGGTTAACTTTCTGGTTGTCAAATTCAATCATGTTGAGAGCAATTGTCAGCCAGGCTCTCGGGGAAATATTGCTTTCTGCGGGACCATACGCTAAAAGTAATGATGGTGAAAGGGGATCGAAAGGAAGATCTCCAAGTACTTCGAACGAGCTTTCTCCCAATGGGGAAGAGGTGGTTGATTCTCTAGAAGAATTTGATGACTGGCAAGACCCGACAACATTTATCGTTGCATTGGAAAAAGTTGAAGCATGGATCTTCTCTCGAATTATTGAATCCGTGTGGTGGCAGACTCTGACTCCACATATGCAGTCTACAGCAGCAAGTAGTAGTAGAAGTATTGGCTCAAGCTCAAAGAAAACCAATGGAAGAAGATATTCGTTAGGCGATCAAGAGCAGGGCAATTTTTCAATAGAACTTTGGAAGAAGGCTTTCAAGGATGCTTGTGAAAGACTTTGTCCAATTCGGGCTGGAGGGCATGAATGTGGCTGCTTGCCTGTTGCTAGATTGGTGATGGAGCAGCTGGTGAGTAGACTAGATGTGGCAATGTTCAATGCCATTCTTCGTGAGTCAGATGAAGAGATGCCGACAGATCCTGTGTCTGACCCTATTGGTGATTCTAGGGTCCTCCCAATTCCTGCTGGAAGAACAAGTTTTGGAGCCGGTGCACAGTTGAAAAATGCTATTGGGAACTGGTCTAGATGGCTTACAGATCTCTTTGGCATAGAGGACAACGACTTTCCAGAAGAAAATGATAGTCTTGGTGATGAAATGAGACCAGAATTTGATACATCCTTCAAGCCTTTCCGTCTTCTCAATGCATTGAGTGATCTCATGATGCTTCCACCCGAAATGCTTGCTGATATCTCTACAAGAAATGAGGTTTGCCCTATATTCGGTACACCATTGATCAAGAGGGTTGTTAACAATTTTGTTCCTGATGAGTTTTGTCCACATCCAATTCCAGATTTTGTTCTCGAGGCCCTGGACTCTGAGGACGATGCTGTGGAGGGCACAGGAGAGTCTCTTTCAAGCTTTCCCTGCATTGCAAACCCTATAGTGTATTCACCGCCACCAGCAGCTTCACTTGCAGGCATCATAGGACAAGTGGGAAGCCAAGCTCTACAAAGATGCAAATCATCAGTGCTCAAAAAAGCATACACTAGTGATGATGAGCTGGATGAGCTTGACTCGCCCTTGACTTCAATCCTCAATGACAACTTTCGTAAGGACTCTCCAAGAGCAAATTGGATGCCAAAAGGAAAGGGTGGTCGTAAGGTTGTCAGATATCAGCTCCTCCGAGAAGTATGGAAAGATGGTGAATAG

Network for GWHGAAZE013699

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0101

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10358.10	NT-C2	14	150	7.20E-11

Protein Sequence

>GWHPAAZE013706
MVLGLRSRHRKGASVQVDYLVHVGEIKPWPPSQSLRSVQSVLLQWENGDQNSGSLTCGVGDTKIEFNESLTLPLTLSREKRARDKFQKNCLEFNLYEPRKDKAPKGQLLGTAIINLAEYGIIEENLTISAPLNCKKSSKNTVQPILFVKIQPIDKDSSNSSPKGGLSKEASIDKDGQDYVSELMNEENDDESEIASFTDDDVTSHSSRTIAFSALEGLGASPYRNEKEELEVAMESTVKGNGELTRPLNPEFSTPVVNPGTELLDQSDRSAQLFSSIELYSDLRNPDNSREIMREDFQKEIGITEGHAQISDSDELVDTVEEKVASSNTHIQVGVNSVASHEETQPNRDAATQASQWRKNGQVKAIAISDLYVGPGDGEEKREREEIERDERILEDMRASVNKQAGKFSQAAIRKQGALRSNTLASDRRALGVQGSTTSNNKLKHMKSVQLPPHLSKANGIPENIHNMDKVKKIDHITGNVAIENKEPQNGSSGNKNEWESRVEMLEEELSEAAAIEVGLYSIVAEHGSSINKVHAPARRLSRFYLHACKASSKDKRASAARATVSGLVLVSKACGNDVPRLTFWLSNSIMLRAIVSQALGEILLSAGPYAKSNDGERGSKGRSPSTSNELSPNGEEVVDSLEEFDDWQDPTTFIVALEKVEAWIFSRIIESVWWQTLTPHMQSTAASSSRSIGSSSKKTNGRRYSLGDQEQGNFSIELWKKAFKDACERLCPIRAGGHECGCLPVARLVMEQLVSRLDVAMFNAILRESDEEMPTDPVSDPIGDSRVLPIPAGRTSFGAGAQLKNAIGNWSRWLTDLFGIEDNDFPEENDSLGDEMRPEFDTSFKPFRLLNALSDLMMLPPEMLADISTRNEVCPIFGTPLIKRVVNNFVPDEFCPHPIPDFVLEALDSEDDAVEGTGESLSSFPCIANPIVYSPPPAASLAGIIGQVGSQALQRCKSSVLKKAYTSDDELDELDSPLTSILNDNFRKDSPRANWMPKGKGGRKVVRYQLLREVWKDGE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.575
	SRR3591706	second leaf	13.206
	SRR3591707	mature leaf	8.646
	SRR3591708	Shoot apex	22.283
	SRR3591709	Stem	34.940
	SRR3591710	White floral bud	10.246
	SRR3591711	White flower	11.584
	SRR3591712	Green floral bud	15.582
	SRR3591713	Yellow flower	3.888
SRP173429	SRR8316895	Juvenile bud stage	23.846
	SRR8316896	Juvenile bud stage	24.594
	SRR8316897	Juvenile bud stage	20.708
	SRR8316894	Third green stage	7.607
	SRR8316900	Third green stage	17.704
	SRR8316901	Third green stage	18.249
	SRR8316898	Complete white stage	6.127
	SRR8316899	Complete white stage	31.902
	SRR8316903	Complete white stage	8.986
	SRR8316902	Silver flowering stage	3.975
	SRR8316904	Silver flowering stage	4.738
	SRR8316905	Silver flowering stage	2.159
	SRR8316906	Gold flowering stage	6.632
	SRR8316907	Gold flowering stage	5.435
	SRR8316908	Gold flowering stage	7.951
SRP132670	SRR6706286	Control	12.872
	SRR6706287	Light intensity 50%	14.292
	SRR6706288	Light intensity 20%	16.521
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.888
	CNS0095593	Slightly white alabastrum(diploid) 2	25.306
	CNS0095594	Slightly white alabastrum(diploid) 3	18.701
	CNS0095595	Whole white alabastrum(diploid) 2	18.642
	CNS0095596	Whole white alabastrum(diploid) 3	8.263
	CNS0095597	Whole white alabastrum(diploid) 4	13.819
	CNS0095598	Silvery flower (diploied) 1	31.939
	CNS0095599	Silvery flower (diploied) 2	37.359
	CNS0095600	Silvery flower (diploied) 3	18.647
	CNS0095601	Golden flower (diploid) 1	33.335
	CNS0095602	Golden flower (diploid) 2	24.630
	CNS0095603	Golden flower (diploid) 3	25.333
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.557
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.937
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.785
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.238
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.275
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.228
	CNS0095610	Silvery flower (tetraploid) 1	8.490
	CNS0095611	Silvery flower (tetraploid) 2	9.353
	CNS0095612	Silvery flower (tetraploid) 3	6.371
	CNS0095613	Golden flower (tetraploid) 1	1.865
	CNS0095614	Golden flower (tetraploid) 2	3.814
	CNS0095615	Golden flower (tetraploid) 3	1.444
CRA001975	CRR073297	Stem 1	22.327
	CRR073298	Stem 2	22.212
	CRR073299	Stem 3	21.171
	CRR073300	Leaf 1	24.648
	CRR073301	Leaf 2	23.337
	CRR073302	Leaf 3	16.987
	CRR073303	Juvenile bud 1	17.630
	CRR073304	Juvenile bud 2	11.051
	CRR073305	Juvenile bud 3	24.009
	CRR073306	Third green 1	2.906
	CRR073307	Third green 2	3.744
	CRR073308	Third green 3	4.096
	CRR073309	Second white 1	2.176
	CRR073310	Second white 2	2.152
	CRR073311	Second white 3	2.338
	CRR073312	Silver flowering 1	2.332
	CRR073313	Silver flowering 2	2.360
	CRR073314	Silver flowering 3	1.675
	CRR073315	Gold flowering 1	14.386
	CRR073316	Gold flowering 2	26.681
	CRR073317	Gold flowering 3	13.530
	CRR073318	Tawny withering 1	46.076
	CRR073319	Tawny withering 2	49.018
	CRR073320	Tawny withering 3	51.601