Detail information of GWHGAAZE013703


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP19899.10unnamed protein product [Coffea canephora]
Swissprottr|Q8GYF7|NUP54_ARATH9E-168Nuclear pore complex protein NUP54 {ECO:0000303|PubMed:21189294}
trEMBLtr|A0A068VH50|A0A068VH50_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_766 {ECO:0000313|EMBL:CDP19899.1}
TAIR10AT1G24310.13E-121Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene106612452106621849-
GWHAAZE00000003mRNA106612452106621849-
GWHAAZE00000003exon106612452106612562-
GWHAAZE00000003exon106613007106613153-
GWHAAZE00000003exon106613246106613347-
GWHAAZE00000003exon106613541106613627-
GWHAAZE00000003exon106613723106613788-
GWHAAZE00000003exon106620800106620910-
GWHAAZE00000003exon106621030106621089-
GWHAAZE00000003exon106621261106621314-
GWHAAZE00000003exon106621420106621849-
GWHAAZE00000003five_prime_UTR106621849106621849-
GWHAAZE00000003CDS106621420106621848-
GWHAAZE00000003CDS106621261106621314-
GWHAAZE00000003CDS106621030106621089-
GWHAAZE00000003CDS106620800106620910-
GWHAAZE00000003CDS106613723106613788-
GWHAAZE00000003CDS106613541106613627-
GWHAAZE00000003CDS106613246106613347-
GWHAAZE00000003CDS106613007106613153-
GWHAAZE00000003CDS106612452106612562-
Transcript Sequence

Network for GWHGAAZE013703

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13874.7Nup541753191.10E-30
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14308NUP54, NUP57 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.324
SRR3591706second leaf22.465
SRR3591707mature leaf12.494
SRR3591708Shoot apex59.483
SRR3591709Stem22.029
SRR3591710White floral bud24.042
SRR3591711White flower28.179
SRR3591712Green floral bud34.877
SRR3591713Yellow flower23.790
SRP173429 SRR8316895Juvenile bud stage 31.910
SRR8316896Juvenile bud stage 44.610
SRR8316897Juvenile bud stage 23.743
SRR8316894Third green stage 16.415
SRR8316900Third green stage 40.635
SRR8316901Third green stage 40.607
SRR8316898Complete white stage 7.494
SRR8316899Complete white stage 38.839
SRR8316903Complete white stage 16.493
SRR8316902Silver flowering stage9.074
SRR8316904Silver flowering stage10.696
SRR8316905Silver flowering stage6.980
SRR8316906Gold flowering stage 17.408
SRR8316907Gold flowering stage 17.558
SRR8316908Gold flowering stage 22.747
SRP132670SRR6706286Control47.203
SRR6706287Light intensity 50%47.254
SRR6706288Light intensity 20%49.009
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.264
CNS0095593Slightly white alabastrum(diploid) 234.867
CNS0095594Slightly white alabastrum(diploid) 334.891
CNS0095595Whole white alabastrum(diploid) 228.818
CNS0095596Whole white alabastrum(diploid) 329.074
CNS0095597Whole white alabastrum(diploid) 423.775
CNS0095598Silvery flower (diploied) 124.497
CNS0095599Silvery flower (diploied) 223.099
CNS0095600Silvery flower (diploied) 324.107
CNS0095601Golden flower (diploid) 123.719
CNS0095602Golden flower (diploid) 222.832
CNS0095603Golden flower (diploid) 321.059
CNS0095604Slightly white alabastrum(tetraploid) 131.675
CNS0095605Slightly white alabastrum(tetraploid) 229.187
CNS0095606Slightly white alabastrum(tetraploid) 344.040
CNS0095607Whole white alabastrum(tetraploid) 121.603
CNS0095608Whole white alabastrum(tetraploid) 217.143
CNS0095609Whole white alabastrum(tetraploid) 335.415
CNS0095610Silvery flower (tetraploid) 126.686
CNS0095611Silvery flower (tetraploid) 228.506
CNS0095612Silvery flower (tetraploid) 322.108
CNS0095613Golden flower (tetraploid) 114.578
CNS0095614Golden flower (tetraploid) 224.007
CNS0095615Golden flower (tetraploid) 311.919
CRA001975CRR073297Stem 146.637
CRR073298Stem 248.155
CRR073299Stem 348.227
CRR073300Leaf 138.151
CRR073301Leaf 242.430
CRR073302Leaf 342.485
CRR073303Juvenile bud 133.660
CRR073304Juvenile bud 228.461
CRR073305Juvenile bud 334.459
CRR073306Third green 15.919
CRR073307Third green 26.028
CRR073308Third green 36.605
CRR073309Second white 113.824
CRR073310Second white 212.040
CRR073311Second white 310.817
CRR073312Silver flowering 17.950
CRR073313Silver flowering 212.451
CRR073314Silver flowering 310.234
CRR073315Gold flowering 127.397
CRR073316Gold flowering 233.393
CRR073317Gold flowering 322.992
CRR073318Tawny withering 128.909
CRR073319Tawny withering 223.030
CRR073320Tawny withering 331.818