Gene detail

Detail information of GWHGAAZE013704

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009766372.1	0	PREDICTED: uncharacterized protein LOC104217757 isoform X2 [Nicotiana sylvestris]
trEMBL	tr\|A0A067K4R3\|A0A067K4R3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26789.1}
TAIR10	AT1G67440.1	1E-161	Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106641493	106644098	+
GWHAAZE00000003	mRNA	106641493	106644098	+
GWHAAZE00000003	exon	106641493	106641930	+
GWHAAZE00000003	exon	106642694	106642915	+
GWHAAZE00000003	exon	106643033	106643227	+
GWHAAZE00000003	exon	106643340	106643533	+
GWHAAZE00000003	exon	106643915	106644098	+
GWHAAZE00000003	CDS	106641493	106641930	+
GWHAAZE00000003	CDS	106642694	106642915	+
GWHAAZE00000003	CDS	106643033	106643227	+
GWHAAZE00000003	CDS	106643340	106643533	+
GWHAAZE00000003	CDS	106643915	106644098	+

Transcript Sequence
>GWHTAAZE013718 ATGGTAGCCTCCGCACAGGCCAATTTCATGCGTGTTGTCATAGAATCGGTTCCTTCCGAGCTTTGTACTGTGCATCGTACCGAAGCTTCTGAAAGCTTCGGCGAGGATTTGGGAGAAGGAAGGAAGATTGGAGTGGAATTGTTGTGTGTGGTGAGGTCGCTGTTGAAGAAGATTAAGAGGAGAGTTATGGTAGGGGACAAGGTGCTGGTTGGGTCCATTGATTGGGTGGACCGTAGAGGAATGATCGAGAATGTGTTTCAGCGCAAATCTGAGATTCTAGATCCGCCTGTGGCTAATGTTGATCAATTGCTGGTGTTGTTTTCTTTGGATCAGCCGAAAGTGGAGGCGTTCTCCCTCACGAGGTTTTTGGTGGAGGCTGAATCTACTGGCATACCTCTCACCCTTGCCATGAACAAAACGGAACTTGTCGATGAAGAGACTCTGGTTACATGGAAATATAGGCTCCGTAGTTGGGGCTATGAACCAGTTTTCTGCAGTGTTGAATCTAAGTATGGTCTCGATACTCTACAGTTCAATTTAAGAGAGCAGACCTCAGTGATTGTAGGGCCAAGTGGTGTTGGGAAGTCCAGTCTTATTAATGCTCTGAGAAGCAACCAACCTGTTATTGGTTTTGCAAAAGGGGATAATTGGTCTGACCCTATTCTAGGCAGCAAGTGGCTTGAAGATCAACGAGTTGGGGAAGTGTCAATAAGAAGTGGCAGAGGGAAGCATACTACTCGGCACGTGTCTTTGCTTCCATTATCTGAAGGAGGATATGTTGCCGATACACCAGGGTTTAACCAGCCTAGTTTGATGAAAGTAACAAAACAATCCCTTGCACAACATTTCCCAGAGGTTCGGAAAATGCTCATGGATAGTGAACCCGCAAAATGCTCGTTCAATGATTGCTTGCATGTTGGTGAACCAGGGTGTGTTGTACAAGGGGATTGGGAAAGATATCCCTACTATCTTCAGTTGCTTGATGAGATCAAAATAAGAGAGGAATTTCAGCTGAGGACTTTTGGAACAAAAAGAGAGGGTGACATAAGGTACAAGATGGGAAATATGGGTGTGAGGCAGGCAGAACCACGCTTGGAGCCTAAGAAGCATCGCAGACAATCTCGTAAGAGGATGAATCAATCACTCCTTGATGAACTAGATGACGATGATGACAACAACATACTAGATGATGAGGATCCCATTTTAAGGGCAATGAAAAATGAGAATCCATAG

Network for GWHGAAZE013704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03193.17	RsgA_GTPase	85	271	3.40E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06949	rsgA, engC	Metabolic pathways	map01100
K06949	rsgA, engC	Thiamine metabolism	map00730

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.148
	SRR3591706	second leaf	21.699
	SRR3591707	mature leaf	21.491
	SRR3591708	Shoot apex	36.987
	SRR3591709	Stem	16.461
	SRR3591710	White floral bud	22.236
	SRR3591711	White flower	26.300
	SRR3591712	Green floral bud	38.341
	SRR3591713	Yellow flower	21.786
SRP173429	SRR8316895	Juvenile bud stage	53.211
	SRR8316896	Juvenile bud stage	87.880
	SRR8316897	Juvenile bud stage	29.187
	SRR8316894	Third green stage	13.701
	SRR8316900	Third green stage	43.023
	SRR8316901	Third green stage	43.200
	SRR8316898	Complete white stage	11.610
	SRR8316899	Complete white stage	47.397
	SRR8316903	Complete white stage	17.663
	SRR8316902	Silver flowering stage	11.243
	SRR8316904	Silver flowering stage	14.269
	SRR8316905	Silver flowering stage	9.247
	SRR8316906	Gold flowering stage	25.975
	SRR8316907	Gold flowering stage	25.734
	SRR8316908	Gold flowering stage	15.714
SRP132670	SRR6706286	Control	30.766
	SRR6706287	Light intensity 50%	34.213
	SRR6706288	Light intensity 20%	37.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.651
	CNS0095593	Slightly white alabastrum(diploid) 2	26.511
	CNS0095594	Slightly white alabastrum(diploid) 3	25.605
	CNS0095595	Whole white alabastrum(diploid) 2	34.300
	CNS0095596	Whole white alabastrum(diploid) 3	18.462
	CNS0095597	Whole white alabastrum(diploid) 4	21.127
	CNS0095598	Silvery flower (diploied) 1	36.495
	CNS0095599	Silvery flower (diploied) 2	97.959
	CNS0095600	Silvery flower (diploied) 3	54.039
	CNS0095601	Golden flower (diploid) 1	61.468
	CNS0095602	Golden flower (diploid) 2	55.854
	CNS0095603	Golden flower (diploid) 3	49.631
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.565
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.269
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.102
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.459
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.158
	CNS0095610	Silvery flower (tetraploid) 1	23.881
	CNS0095611	Silvery flower (tetraploid) 2	31.008
	CNS0095612	Silvery flower (tetraploid) 3	21.814
	CNS0095613	Golden flower (tetraploid) 1	12.431
	CNS0095614	Golden flower (tetraploid) 2	19.022
	CNS0095615	Golden flower (tetraploid) 3	8.784
CRA001975	CRR073297	Stem 1	45.193
	CRR073298	Stem 2	45.108
	CRR073299	Stem 3	49.314
	CRR073300	Leaf 1	50.917
	CRR073301	Leaf 2	52.566
	CRR073302	Leaf 3	52.995
	CRR073303	Juvenile bud 1	60.062
	CRR073304	Juvenile bud 2	53.162
	CRR073305	Juvenile bud 3	52.894
	CRR073306	Third green 1	12.460
	CRR073307	Third green 2	9.342
	CRR073308	Third green 3	11.767
	CRR073309	Second white 1	22.620
	CRR073310	Second white 2	16.197
	CRR073311	Second white 3	16.697
	CRR073312	Silver flowering 1	9.636
	CRR073313	Silver flowering 2	10.045
	CRR073314	Silver flowering 3	17.962
	CRR073315	Gold flowering 1	33.126
	CRR073316	Gold flowering 2	42.168
	CRR073317	Gold flowering 3	26.831
	CRR073318	Tawny withering 1	19.758
	CRR073319	Tawny withering 2	24.716
	CRR073320	Tawny withering 3	21.446