Gene detail

Detail information of GWHGAAZE013714

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009796451.1	0	PREDICTED: F-box protein At1g67340 [Nicotiana sylvestris]
Swissprot	tr\|Q9FYF9\|FB76_ARATH	3E-177	F-box protein At1g67340
trEMBL	tr\|K4BYQ8\|K4BYQ8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g015420.2.1}
TAIR10	AT1G67340.1	3E-124	HCP-like superfamily protein with MYND-type zinc finger

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106823009	106824417	-
GWHAAZE00000003	mRNA	106823009	106824417	-
GWHAAZE00000003	exon	106823009	106823788	-
GWHAAZE00000003	exon	106823869	106824031	-
GWHAAZE00000003	exon	106824149	106824417	-
GWHAAZE00000003	CDS	106824149	106824417	-
GWHAAZE00000003	CDS	106823869	106824031	-
GWHAAZE00000003	CDS	106823009	106823788	-

Transcript Sequence
>GWHTAAZE013728 ATGAGAACGAGAAGAGGATTTTGTTATCCAAAAGTACGAAACGCCGCTTGTTGTTGTGAGGAGGAGGAAGATGGAGTTGTCAAGAGGAAAAGATATTTGTTCACTAGCCAGCAGATGCATAACCGGAAACGCTTTAAGTCCTCGCCGGAGACAGCCTCCGGTGGTACTGATTTCTTTGATTCTTTGCCTGATGATCTCCTACTTTCTATTCTCTGCAAACTCAGCTCCACCGCCGCCTCTCCTTCAGATTTCATCAGCGTTTTGATGACGTGCAGAAGACTAAACGGATTAGGCCTCAACTCACTTGTATTATCCAAAGCTTCTCCAAAAACTTTTGCTATAAGACCAACCAATTGGTCTGAGTCCGCTCACCGATTCTTAAAGCAGTGCGCCGATGCCGGAAATATTGAAGCTTGCTACACTCTTGGCATGATTCGCTTCTACTGTTTGCACAATCGAGGCAGCGGAGCCTCTCTGATGGCCAAGGCAGCGATGACATCTCACGCGCCGGCACTCTACTCGCTGGCCGTTATTCAGTTCAACGGCAGCGGCGGCTCTAAAAACGACAAAGACCTCCGAGCCGGCGTGGCTCTTTGCGCCAGAGCCGCCTTCTTAGGCCACATAGACGCTCTTCGAGAGCTTGGGCACTGCCTTCAAGACGGCTACGGCGTTCGCCAAAACATCTCCGAGGGCCGCCGATTCCTTGTCCAAGCCAACGCCCGTGAATTAGCCGCCGTTCTATCAACAACGCCGTCGGCTCTTACCACCGGCTCGTGGCTGACGTGGAACCCGATTCCACACCACCGCCACGTGTTAGGCTCAGGATGTCCGTTACTCAGTGATTTCGGCTGCAATGTTCCGGCTCCAGAGGCTCACCCTGCCAGCCGTTTTTTGACCGACTGGTTCTCGGCTAAGGGTGGGGAGCCCGGTTCGGGGCTAAGGCTATGCTCTCATACGGGTTGTGGACGACCCGAGACTAGGAGGCACGAGTTTCGAAGGTGTTCGGTGTGTGGGGCAGTGAACTACTGCTCACGTGCTTGCCAGGCGCTTGATTGGAAGATGCGCCACAAGGCGGAGTGCGCACCGGTTGAGAGGTGGCTCGATGACGACGGTGAAGATAACGCTAACGTTGACGTTGAGGAGGAGAATATTAATGGCGGGTTTCAAGGGAATAATAATGAGGGAGGAGTTGTTGCCATGGTTGAGAGCTAA

Network for GWHGAAZE013714

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01753.19	zf-MYND	321	360	1.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.133
	SRR3591706	second leaf	21.480
	SRR3591707	mature leaf	26.208
	SRR3591708	Shoot apex	16.761
	SRR3591709	Stem	26.559
	SRR3591710	White floral bud	9.138
	SRR3591711	White flower	13.751
	SRR3591712	Green floral bud	1.724
	SRR3591713	Yellow flower	4.945
SRP173429	SRR8316895	Juvenile bud stage	7.540
	SRR8316896	Juvenile bud stage	5.666
	SRR8316897	Juvenile bud stage	1.471
	SRR8316894	Third green stage	1.505
	SRR8316900	Third green stage	1.417
	SRR8316901	Third green stage	2.645
	SRR8316898	Complete white stage	0.408
	SRR8316899	Complete white stage	6.352
	SRR8316903	Complete white stage	0.558
	SRR8316902	Silver flowering stage	0.946
	SRR8316904	Silver flowering stage	0.677
	SRR8316905	Silver flowering stage	0.233
	SRR8316906	Gold flowering stage	2.348
	SRR8316907	Gold flowering stage	2.422
	SRR8316908	Gold flowering stage	1.038
SRP132670	SRR6706286	Control	1.717
	SRR6706287	Light intensity 50%	1.507
	SRR6706288	Light intensity 20%	0.808
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.336
	CNS0095593	Slightly white alabastrum(diploid) 2	7.765
	CNS0095594	Slightly white alabastrum(diploid) 3	5.711
	CNS0095595	Whole white alabastrum(diploid) 2	5.226
	CNS0095596	Whole white alabastrum(diploid) 3	0.586
	CNS0095597	Whole white alabastrum(diploid) 4	5.615
	CNS0095598	Silvery flower (diploied) 1	30.610
	CNS0095599	Silvery flower (diploied) 2	30.895
	CNS0095600	Silvery flower (diploied) 3	8.309
	CNS0095601	Golden flower (diploid) 1	22.296
	CNS0095602	Golden flower (diploid) 2	15.437
	CNS0095603	Golden flower (diploid) 3	15.031
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.687
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.801
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.684
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.112
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.041
	CNS0095610	Silvery flower (tetraploid) 1	0.604
	CNS0095611	Silvery flower (tetraploid) 2	0.817
	CNS0095612	Silvery flower (tetraploid) 3	1.574
	CNS0095613	Golden flower (tetraploid) 1	0.596
	CNS0095614	Golden flower (tetraploid) 2	1.092
	CNS0095615	Golden flower (tetraploid) 3	0.570
CRA001975	CRR073297	Stem 1	5.597
	CRR073298	Stem 2	5.070
	CRR073299	Stem 3	6.295
	CRR073300	Leaf 1	3.892
	CRR073301	Leaf 2	7.346
	CRR073302	Leaf 3	2.333
	CRR073303	Juvenile bud 1	0.942
	CRR073304	Juvenile bud 2	1.685
	CRR073305	Juvenile bud 3	5.033
	CRR073306	Third green 1	5.051
	CRR073307	Third green 2	2.429
	CRR073308	Third green 3	3.330
	CRR073309	Second white 1	4.313
	CRR073310	Second white 2	4.012
	CRR073311	Second white 3	5.017
	CRR073312	Silver flowering 1	13.039
	CRR073313	Silver flowering 2	11.386
	CRR073314	Silver flowering 3	3.631
	CRR073315	Gold flowering 1	21.969
	CRR073316	Gold flowering 2	26.239
	CRR073317	Gold flowering 3	23.391
	CRR073318	Tawny withering 1	14.514
	CRR073319	Tawny withering 2	20.855
	CRR073320	Tawny withering 3	20.597