Gene detail

Detail information of GWHGAAZE013715

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009787153.1	3.2983E-165	PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris]
Swissprot	tr\|P10708\|CB12_SOLLC	5E-166	Chlorophyll a-b binding protein 7, chloroplastic (Precursor)
trEMBL	tr\|I1KHL4\|I1KHL4_SOYBN	3E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G05320.1}
TAIR10	AT3G61470.1	1E-115	photosystem I light harvesting complex gene 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106867814	106870329	+
GWHAAZE00000003	mRNA	106867814	106870329	+
GWHAAZE00000003	exon	106867814	106867884	+
GWHAAZE00000003	exon	106868571	106868759	+
GWHAAZE00000003	exon	106868856	106868893	+
GWHAAZE00000003	exon	106868982	106869496	+
GWHAAZE00000003	exon	106869857	106870329	+
GWHAAZE00000003	CDS	106867814	106867884	+
GWHAAZE00000003	CDS	106868571	106868759	+
GWHAAZE00000003	CDS	106868856	106868893	+
GWHAAZE00000003	CDS	106868982	106869496	+
GWHAAZE00000003	CDS	106869857	106869874	+
GWHAAZE00000003	three_prime_UTR	106869875	106870329	+

Transcript Sequence
>GWHTAAZE013729 ATGCTGAAAGTGACTGTAGTAGAATATCACCAGCTCTTAAAATGTCAACCACCAGCTTCAGATTGGTCCAGTTCCCAGAAGAATGGATCAATTGTGGGAGCAACAAAGGCTTCTTTCCTTAGTGGAAGGAAACTGAGAGTGAGCAAGTACAAACCTGCTACTGTTGGATCACCATCCGTTGGTGTAGTTTGCACCGTGGCTGACCCAGAAAGGCCCATCTGGTTCCCTGGCAGCACCCCTCCCCCGTGGCTTGATGGCAGCCTACCTGGAGATTTTGGCTTTGATCCTCTTGGTCTAGGATCCGATCCCGAGACCTTGAAATGGAACCAGCAAGCAGAGCTTGTACACTGCAGATGGGCAATGTTGGGTGCTGCTGGTATTTTCATTCCTGAATTTTTAACAAAGATTGGAATTCTAAACACTCCTTCATGGTACACTGCCGGTGAACAAGAATACTTCACTGACAAAACCACGCTGTTCATTGTGGAGTTGGTTTTGATTGGGTGGGCCGAGGGAAGAAGGTGGGCAGATATAATCAAGCCAGGGTGTGTGAACACTGACCCCATCTTCCCTAACAACAAGCTCACAGGGACAGATGTCGGCTACCCAGGTGGTCTGTGGTTTGACCCACTTGGTTGGGGAAGTGGCTCTCCTGAGAAAATCAAGGAGTTGAGGACTAAGGAGATCAAAAACGGAAGACTCGCCATGTTGGCTGTGATGGGTGCATGGTTCCAAGCCAACTACACCGGAACAGGACCCATTGACAACCTCTTTGCTCACCTTGCTGATCCCGGTCATGCCACCATTTTTGCAGCTTTCAGCCCCAAGTGAGAAGCAAGGGAGAATTCTACCTGCGATTGATGGAGAAACAATGTTGAACAACTTTGTGGGCTGGAAAGTTTAAAGTGTGTTTTTCTATGTGTCTATGTGATGATTATATCATTAGAATTTTTATTCCCCATCTGGTGTCTGTTGTAGAAAGCTCGTGCAGTGTACAAATACCTCTTTTCAACTTGAAACTCCATGAATATAAATTCGAGTCCTAATGAAATGCTGCTAAAATATGCATCCATTTGTATGGTAGAGGGATAATCTTAGACCATTGATCTTCAGAACGTATAACAAAAGGACTCAACTATAGGTTGGCACTATCAAGAATTTTTCAAGAAGAATCAAATAAAAGGAAAATATAGGATCACCACATTGTTATCTGAGCATTGCATAAACAAAATAGCAGAAATCTGCAAATTTCAACATGTCAATTATCAGATCAGGTTATCTACGAA

Network for GWHGAAZE013715

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	80	246	2.00E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08908	LHCA2	Metabolic pathways	map01100
K08908	LHCA2	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	310.134
	SRR3591706	second leaf	1717.717
	SRR3591707	mature leaf	1549.323
	SRR3591708	Shoot apex	607.338
	SRR3591709	Stem	340.443
	SRR3591710	White floral bud	37.591
	SRR3591711	White flower	44.782
	SRR3591712	Green floral bud	44.717
	SRR3591713	Yellow flower	16.482
SRP173429	SRR8316895	Juvenile bud stage	165.162
	SRR8316896	Juvenile bud stage	148.312
	SRR8316897	Juvenile bud stage	114.675
	SRR8316894	Third green stage	51.421
	SRR8316900	Third green stage	116.961
	SRR8316901	Third green stage	101.214
	SRR8316898	Complete white stage	18.611
	SRR8316899	Complete white stage	74.139
	SRR8316903	Complete white stage	31.124
	SRR8316902	Silver flowering stage	7.737
	SRR8316904	Silver flowering stage	7.731
	SRR8316905	Silver flowering stage	3.882
	SRR8316906	Gold flowering stage	8.139
	SRR8316907	Gold flowering stage	10.439
	SRR8316908	Gold flowering stage	15.839
SRP132670	SRR6706286	Control	150.092
	SRR6706287	Light intensity 50%	111.653
	SRR6706288	Light intensity 20%	116.703
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	214.757
	CNS0095593	Slightly white alabastrum(diploid) 2	159.103
	CNS0095594	Slightly white alabastrum(diploid) 3	160.176
	CNS0095595	Whole white alabastrum(diploid) 2	138.907
	CNS0095596	Whole white alabastrum(diploid) 3	143.691
	CNS0095597	Whole white alabastrum(diploid) 4	90.894
	CNS0095598	Silvery flower (diploied) 1	225.646
	CNS0095599	Silvery flower (diploied) 2	209.161
	CNS0095600	Silvery flower (diploied) 3	79.368
	CNS0095601	Golden flower (diploid) 1	215.116
	CNS0095602	Golden flower (diploid) 2	139.993
	CNS0095603	Golden flower (diploid) 3	135.810
	CNS0095604	Slightly white alabastrum(tetraploid) 1	265.980
	CNS0095605	Slightly white alabastrum(tetraploid) 2	287.807
	CNS0095606	Slightly white alabastrum(tetraploid) 3	397.035
	CNS0095607	Whole white alabastrum(tetraploid) 1	127.793
	CNS0095608	Whole white alabastrum(tetraploid) 2	125.363
	CNS0095609	Whole white alabastrum(tetraploid) 3	226.836
	CNS0095610	Silvery flower (tetraploid) 1	141.906
	CNS0095611	Silvery flower (tetraploid) 2	257.907
	CNS0095612	Silvery flower (tetraploid) 3	79.134
	CNS0095613	Golden flower (tetraploid) 1	37.233
	CNS0095614	Golden flower (tetraploid) 2	110.405
	CNS0095615	Golden flower (tetraploid) 3	26.189
CRA001975	CRR073297	Stem 1	152.520
	CRR073298	Stem 2	118.735
	CRR073299	Stem 3	219.002
	CRR073300	Leaf 1	24.454
	CRR073301	Leaf 2	39.310
	CRR073302	Leaf 3	41.211
	CRR073303	Juvenile bud 1	26.542
	CRR073304	Juvenile bud 2	14.969
	CRR073305	Juvenile bud 3	45.698
	CRR073306	Third green 1	6.614
	CRR073307	Third green 2	3.084
	CRR073308	Third green 3	5.443
	CRR073309	Second white 1	5.118
	CRR073310	Second white 2	5.379
	CRR073311	Second white 3	2.648
	CRR073312	Silver flowering 1	3.618
	CRR073313	Silver flowering 2	2.608
	CRR073314	Silver flowering 3	3.493
	CRR073315	Gold flowering 1	1978.250
	CRR073316	Gold flowering 2	1709.019
	CRR073317	Gold flowering 3	2103.928
	CRR073318	Tawny withering 1	145.975
	CRR073319	Tawny withering 2	127.112
	CRR073320	Tawny withering 3	124.464