Gene detail

Detail information of GWHGAAZE013722

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655960.1	1.2026E-126	PREDICTED: squamosa promoter-binding-like protein 2 isoform X2 [Vitis vinifera]
Swissprot	tr\|A2YGR5\|SPL12_ORYSI	3E-78	Squamosa promoter-binding-like protein 12
trEMBL	tr\|F6HGB1\|F6HGB1_VITVI	4E-127	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51304.1}
TAIR10	AT5G43270.3	3E-45	squamosa promoter binding protein-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106984959	106987462	-
GWHAAZE00000003	mRNA	106984959	106987462	-
GWHAAZE00000003	exon	106984959	106985248	-
GWHAAZE00000003	exon	106985382	106985645	-
GWHAAZE00000003	exon	106986414	106986550	-
GWHAAZE00000003	exon	106986810	106987462	-
GWHAAZE00000003	CDS	106986810	106987462	-
GWHAAZE00000003	CDS	106986414	106986550	-
GWHAAZE00000003	CDS	106985382	106985645	-
GWHAAZE00000003	CDS	106984959	106985248	-

Transcript Sequence
>GWHTAAZE013736 ATGGAGTGGAATGCTAAGTGGGATTGGGAAAGCCTGGACATGTTCAGCTCAAAAGCCAGTGAAACTCCTAAGAACTGGGTCTGGGGTATTATTGAAGAGGGAGACATTGTTGCGGACTCTTTCAATTTGACTGCAACTGCTGGTGGTAGTGGTGGTTCTGTCTCTGATATGGGTCCCTCAACTAAGAGCTCAATTTCAGCTTCAACAGGTTCTGCGTCAAAGGAAGAGATGAAAACATCCAATTTCACTTTTGAGGCATTTGCAGATCTTCCTCAAGATTTTCTAAAGAAGAAAGAGTTAGCCAGAGCTGAGCTAACTGGAACTTCACACAGCTCTAGTGAACCACTGATGTGCTTGAAACTTGGTAAGCGCACTTACTTTGAAAACAGTAGTATTGCTGGGAGCAATCCTAAAGTACCATCTAGCTTGGAGATTCCAGTATCTTCTTCAGCCACCACCGATACAAAGAAAATCAAATCATCTTGTCAGAGTCCCCTTATAATTAATCAAAGGTGTCAAGTTGAAGGCTGCAACCTTGATCTCTCTTCAGCAAAAGAATATCATCGTAAGCATAGAGTTTGTGAAAGTCATTCAAAATCCTCAAAGGTAGTTATCCGAGGTCTAGAGCGCCGATTTTGCCAACAATGTAGCAGGTTCCATAATTTGTCAGAATTTGACGAGAAGAAGCGGAGCTGTCGCAGGCGACTTTCTGATCACAATGCACGGCGCCGCAAGCCACAACATGAGACAATTCAGTTTAATTCAACCAGGCTGTGTTCATCAGTTTATGATGAGAGGCAACAGATGAGTTTTATGCTGCACAATGCCCCCCTTGCTTACAGTACAAGACCTGCCGCCAACAACTCAACTTGGGAAAGCACATGCAGCTCCAAGCTTACATTTTCTAAAGGGTATCTATTCAAATCTCACACTGATCGGCAGCCTTATTTGCCACCAATTCAGCTTCCCCGTGCTACTATTACTAATATACCTAACCATGAAACCACTAGGCTCTCACCGAGTAAGGGAACCACAACCGAGGTTTTTTATCAAGGTTTGAAGGAACCAGTGTTCTCTTCCAACTCAGATGCAGCACCAGATCTTCGTCGTGCTCTCTCTCTTCTGTCATCTAATGGGTGGGGTGGTTTATTAGAGTCCGGATCTTCTGCTACTCCACTTGTTTCAGCAGAGTATTGGCAGGCTTCTCAACAAAATTCCAGTGACCCCTTCATGCATGTTTTGGCTGGCAACGGCAACAGAAGCACCAACAGCAGCCACTTTCAAGAGATTCAGCTTTTCAAAGCACCGTTCGAGACCGGCTTTTACTGCAGTTCGTTAAACTAA

Network for GWHGAAZE013722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	172	245	4.70E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.344
	SRR3591706	second leaf	5.030
	SRR3591707	mature leaf	11.880
	SRR3591708	Shoot apex	6.010
	SRR3591709	Stem	14.709
	SRR3591710	White floral bud	13.715
	SRR3591711	White flower	22.913
	SRR3591712	Green floral bud	14.416
	SRR3591713	Yellow flower	37.720
SRP173429	SRR8316895	Juvenile bud stage	10.937
	SRR8316896	Juvenile bud stage	13.350
	SRR8316897	Juvenile bud stage	10.267
	SRR8316894	Third green stage	6.444
	SRR8316900	Third green stage	11.940
	SRR8316901	Third green stage	13.851
	SRR8316898	Complete white stage	5.246
	SRR8316899	Complete white stage	23.789
	SRR8316903	Complete white stage	11.716
	SRR8316902	Silver flowering stage	7.027
	SRR8316904	Silver flowering stage	10.196
	SRR8316905	Silver flowering stage	3.692
	SRR8316906	Gold flowering stage	22.609
	SRR8316907	Gold flowering stage	17.817
	SRR8316908	Gold flowering stage	42.653
SRP132670	SRR6706286	Control	15.053
	SRR6706287	Light intensity 50%	13.304
	SRR6706288	Light intensity 20%	13.579
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.573
	CNS0095593	Slightly white alabastrum(diploid) 2	13.456
	CNS0095594	Slightly white alabastrum(diploid) 3	12.389
	CNS0095595	Whole white alabastrum(diploid) 2	8.964
	CNS0095596	Whole white alabastrum(diploid) 3	4.666
	CNS0095597	Whole white alabastrum(diploid) 4	7.282
	CNS0095598	Silvery flower (diploied) 1	18.531
	CNS0095599	Silvery flower (diploied) 2	12.552
	CNS0095600	Silvery flower (diploied) 3	10.542
	CNS0095601	Golden flower (diploid) 1	14.881
	CNS0095602	Golden flower (diploid) 2	18.820
	CNS0095603	Golden flower (diploid) 3	15.871
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.247
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.846
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.391
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.496
	CNS0095610	Silvery flower (tetraploid) 1	18.601
	CNS0095611	Silvery flower (tetraploid) 2	12.688
	CNS0095612	Silvery flower (tetraploid) 3	17.661
	CNS0095613	Golden flower (tetraploid) 1	18.137
	CNS0095614	Golden flower (tetraploid) 2	22.085
	CNS0095615	Golden flower (tetraploid) 3	14.819
CRA001975	CRR073297	Stem 1	20.843
	CRR073298	Stem 2	18.407
	CRR073299	Stem 3	8.201
	CRR073300	Leaf 1	25.237
	CRR073301	Leaf 2	24.208
	CRR073302	Leaf 3	10.021
	CRR073303	Juvenile bud 1	9.535
	CRR073304	Juvenile bud 2	3.753
	CRR073305	Juvenile bud 3	14.591
	CRR073306	Third green 1	1.777
	CRR073307	Third green 2	2.531
	CRR073308	Third green 3	2.472
	CRR073309	Second white 1	3.753
	CRR073310	Second white 2	5.503
	CRR073311	Second white 3	4.777
	CRR073312	Silver flowering 1	5.068
	CRR073313	Silver flowering 2	5.914
	CRR073314	Silver flowering 3	6.444
	CRR073315	Gold flowering 1	3.323
	CRR073316	Gold flowering 2	7.927
	CRR073317	Gold flowering 3	1.529
	CRR073318	Tawny withering 1	18.657
	CRR073319	Tawny withering 2	15.880
	CRR073320	Tawny withering 3	15.690