Gene detail

Detail information of GWHGAAZE013733

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP26835.1	hypothetical protein JCGZ_17993 [Jatropha curcas]
Swissprot	tr\|Q9C509\|SGPL_ARATH	Sphingosine-1-phosphate lyase
trEMBL	tr\|A0A067K3K9\|A0A067K3K9_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP26835.1}
TAIR10	AT1G27980.1	dihydrosphingosine phosphate lyase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107255969	107263304	+
GWHAAZE00000003	mRNA	107255969	107263304	+
GWHAAZE00000003	exon	107255969	107256171	+
GWHAAZE00000003	exon	107256280	107256325	+
GWHAAZE00000003	exon	107257476	107257627	+
GWHAAZE00000003	exon	107257748	107257807	+
GWHAAZE00000003	exon	107258079	107258303	+
GWHAAZE00000003	exon	107258395	107258536	+
GWHAAZE00000003	exon	107258677	107258727	+
GWHAAZE00000003	exon	107258813	107258904	+
GWHAAZE00000003	exon	107259754	107259880	+
GWHAAZE00000003	exon	107261460	107261475	+
GWHAAZE00000003	exon	107261573	107261680	+
GWHAAZE00000003	exon	107261774	107261828	+
GWHAAZE00000003	exon	107261904	107262050	+
GWHAAZE00000003	exon	107262153	107262231	+
GWHAAZE00000003	exon	107263182	107263304	+
GWHAAZE00000003	CDS	107255969	107256171	+
GWHAAZE00000003	CDS	107256280	107256325	+
GWHAAZE00000003	CDS	107257476	107257627	+
GWHAAZE00000003	CDS	107257748	107257807	+
GWHAAZE00000003	CDS	107258079	107258303	+
GWHAAZE00000003	CDS	107258395	107258536	+
GWHAAZE00000003	CDS	107258677	107258727	+
GWHAAZE00000003	CDS	107258813	107258904	+
GWHAAZE00000003	CDS	107259754	107259880	+
GWHAAZE00000003	CDS	107261460	107261475	+
GWHAAZE00000003	CDS	107261573	107261680	+
GWHAAZE00000003	CDS	107261774	107261828	+
GWHAAZE00000003	CDS	107261904	107262050	+
GWHAAZE00000003	CDS	107262153	107262231	+
GWHAAZE00000003	CDS	107263182	107263304	+

Transcript Sequence
>GWHTAAZE013747 ATGGAAGAATCGTTACTATGGTCGTCCCTAAATCGGTTGAGAACTAGTTCCAATTCATTCCTGTCTCAATACGAACCTCTCGCTCTGGTCTTCGCCCCTTTTATATCTATACTCCTCGCTTGGATTCTTCAATCCTTCTTCCATCTACTCCGCGACCAGGGGCTCAAAACTACCCTCCTAGGGTTCTTCATGAGCTCCCTCAAGTTGGTACCTGGTGTAAAGAAGTACATCGATGCCGAAAAACAAAAGGTTGTGGATAAGCTGCAATCTTCTGGTAAATCTAAAAGGGATGATTGGAGGAGTGAGTTGCCCAAGGCAGGATTAGGAGTTGGAGTTATAGAGAAAATGAAAGATGAGAAAAGAAATGATGTGGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAGTCTGAAGGACATTTTTCTTTGATAAATGAGGCATGTTCAATGTTTGCACACACCAACCCACTCCATCTGGATGTGTTCCAGAGTGTTGTCAGATTTGAGGCAGAAGTTGTTGCTATGACGGCTGCATTACTTGGTAGCAAAGAAAAGTCTTCTGGAGGACAAATTTGTGGAAACATGACATCAGGAGGAACTGAAAGTATACTATTAGCTGTGAAATCATCACGTGATTATATGAAAGCTAAGAAGGGAAACATAAGACCAGAGATGATAATCCCAGAATCAGCACACTCGGCTTATGACAAGGCTGCTCAATATTTCAACATCAAGTTGTGGCGTGTACCTGTAAATAAAGAATTTCAAGCAGATGCCAAGGCTATTAAACGACTTATCAACAAGAACACTATTTTGATTGTAGGATCTGCACCTGGATTTCCACATGGGATAATTGATCCCATTGAGGAACTTGGCGAGTTGGCATTTTGTTCCGGAATTTGTTTACATGTTGACCTATGTCTCGGTGGTTTTGTGTTACCTTTTGCTCGTAAACTTGGTTATCCTGTTCCACCGTTTGACTTTTCTGTCCAAGGAGTAACCTCGATATCAGTGGATGTACATAAGTATGGATTGGCTCCGAAAGGAACAAGTGTAGTTCTGTACAGAAACCATGACATTCGAAAGCATCAATTTGTTGCTGTTACTGAGTGGTCTGGTGGGCTTTATGTGTCTCCAACAATTGCTGGAAGTAGGCCTGGAGGTTTGATTGCTGGGGCTTGGGCAGCAATGATGTCTTTAGGGCTGGAAGGTTACCTGGAGCACACAAGGGAGATCATGGAAGCATCAAAGATGATACAAAAAGGAACGAAAGAGATTCCAGAGTTGTTTATTATTGGAAGGCCAGACATGACGATAGTGGCTTTTGGATCTCACACTTTAGATATATTTGAAGTCAATGACATTATGTCATCCAAAGGCTGGCATTTGAATGCGTTGCAGAGACCAAACAGCATTCATATCTGTGTCACCCTTCAACATGTACCTTTTGTCGAGGACTTCCTGAAGGACCTGGAGGATTCTGTGCAAACTGTGAAAGAAAATCCAGGTCCAGTAAGTGGAGGGCTTGCTCCGATATATGGTGCTGCAGGGAAGATGCCAGATAGGTCTATGGTAAAGGAATTACTGGTGGATTTCATGGACAGTTCATGCTAG

Network for GWHGAAZE013733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	153	446	3.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01634	SGPL1, DPL1	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0016831	molecular_function	carboxy-lyase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.497
	SRR3591706	second leaf	18.468
	SRR3591707	mature leaf	34.860
	SRR3591708	Shoot apex	21.729
	SRR3591709	Stem	106.118
	SRR3591710	White floral bud	311.945
	SRR3591711	White flower	382.044
	SRR3591712	Green floral bud	44.299
	SRR3591713	Yellow flower	838.325
SRP173429	SRR8316895	Juvenile bud stage	32.985
	SRR8316896	Juvenile bud stage	62.685
	SRR8316897	Juvenile bud stage	24.785
	SRR8316894	Third green stage	21.004
	SRR8316900	Third green stage	49.241
	SRR8316901	Third green stage	49.215
	SRR8316898	Complete white stage	127.443
	SRR8316899	Complete white stage	90.292
	SRR8316903	Complete white stage	196.770
	SRR8316902	Silver flowering stage	128.546
	SRR8316904	Silver flowering stage	192.767
	SRR8316905	Silver flowering stage	82.762
	SRR8316906	Gold flowering stage	273.861
	SRR8316907	Gold flowering stage	301.307
	SRR8316908	Gold flowering stage	320.109
SRP132670	SRR6706286	Control	55.347
	SRR6706287	Light intensity 50%	61.024
	SRR6706288	Light intensity 20%	54.361
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.027
	CNS0095593	Slightly white alabastrum(diploid) 2	33.961
	CNS0095594	Slightly white alabastrum(diploid) 3	43.443
	CNS0095595	Whole white alabastrum(diploid) 2	32.131
	CNS0095596	Whole white alabastrum(diploid) 3	32.832
	CNS0095597	Whole white alabastrum(diploid) 4	36.303
	CNS0095598	Silvery flower (diploied) 1	138.080
	CNS0095599	Silvery flower (diploied) 2	134.624
	CNS0095600	Silvery flower (diploied) 3	405.260
	CNS0095601	Golden flower (diploid) 1	139.887
	CNS0095602	Golden flower (diploid) 2	370.211
	CNS0095603	Golden flower (diploid) 3	362.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.258
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.472
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.491
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.935
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.187
	CNS0095610	Silvery flower (tetraploid) 1	641.784
	CNS0095611	Silvery flower (tetraploid) 2	455.937
	CNS0095612	Silvery flower (tetraploid) 3	354.266
	CNS0095613	Golden flower (tetraploid) 1	578.574
	CNS0095614	Golden flower (tetraploid) 2	557.825
	CNS0095615	Golden flower (tetraploid) 3	557.240
CRA001975	CRR073297	Stem 1	49.704
	CRR073298	Stem 2	50.689
	CRR073299	Stem 3	29.843
	CRR073300	Leaf 1	44.382
	CRR073301	Leaf 2	45.623
	CRR073302	Leaf 3	35.556
	CRR073303	Juvenile bud 1	40.927
	CRR073304	Juvenile bud 2	46.136
	CRR073305	Juvenile bud 3	49.204
	CRR073306	Third green 1	92.096
	CRR073307	Third green 2	101.850
	CRR073308	Third green 3	83.412
	CRR073309	Second white 1	173.377
	CRR073310	Second white 2	127.416
	CRR073311	Second white 3	125.847
	CRR073312	Silver flowering 1	231.709
	CRR073313	Silver flowering 2	314.098
	CRR073314	Silver flowering 3	256.131
	CRR073315	Gold flowering 1	22.589
	CRR073316	Gold flowering 2	37.581
	CRR073317	Gold flowering 3	25.761
	CRR073318	Tawny withering 1	43.936
	CRR073319	Tawny withering 2	44.475
	CRR073320	Tawny withering 3	35.712