Gene detail

Detail information of GWHGAAZE013744

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011086845.1	PREDICTED: serine/threonine-protein kinase PBS1 [Sesamum indicum]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	Serine/threonine-protein kinase PBS1
trEMBL	tr\|B9RM95\|B9RM95_RICCO	Receptor serine-threonine protein kinase, putative {ECO:0000313\|EMBL:EEF47418.1}
TAIR10	AT5G13160.1	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107462540	107466368	+
GWHAAZE00000003	mRNA	107462540	107466368	+
GWHAAZE00000003	exon	107462540	107462747	+
GWHAAZE00000003	exon	107463375	107463580	+
GWHAAZE00000003	exon	107463944	107464133	+
GWHAAZE00000003	exon	107465363	107465754	+
GWHAAZE00000003	exon	107465910	107466368	+
GWHAAZE00000003	five_prime_UTR	107462540	107462599	+
GWHAAZE00000003	CDS	107462600	107462747	+
GWHAAZE00000003	CDS	107463375	107463580	+
GWHAAZE00000003	CDS	107463944	107464133	+
GWHAAZE00000003	CDS	107465363	107465754	+
GWHAAZE00000003	CDS	107465910	107466368	+

Transcript Sequence
>GWHTAAZE013758 TGATAATTGGGGCCGGCCGGCTGGGGAGAGGAGAGGATAAATAGATAGATTTAGATAAAAATGGGTTGTTTTCCTTGTTTTGATTCAAGAGATGCCCAAAAGCTCAATACCTCCCAGATTCACAAAAATCATCATCCCAACAACCACCACCATGATGACGATGCCCACCTAACAATCCCCCCTGCCAATATTTCCAGATTATCTTCTGGAGCAGACAGGCTCAAATCAAGAAGCAACACAGCAATAAGGAGGGAATCATCGGCCCCAAAGGATGTGCCTGATGTTAATATAGCTGCACACACTTTCACTTTTCGGGAGCTTGCTGCTGCAACCAACAATTTCAGGCCTGAGTCCTTCATCGGGGAAGGAGGATTTGGCCGTGTTTATAAAGGGCAGCTTCTTACAACGGGTCAGGTTGTAGCAGTTAAACAATTGGACAGAGATGGGCTTCAGGGTAATAGGGAATTTCTTGTGGAAGTTCTAATGCTTAGCCTTCTGCATCATCCTAACCTGGTGAATTTGATTGGATATTGTGCTGATGGGGACCAACGGCTTCTTGTATACGAATTCATGCCCATGGGATCTTTGGAAGATCACCTTCATGATCTTCCACCTGATAAAGAACCATTAGATTGGGCAACTAGAATGAAGATAGCAGCTGGAGCGGCCAGAGGATTGGAGTTCCTCCATGATAAGGCAAACCCTCCAGTGATCTATAGGGACTTCAAATCATCCAACATATTATTGGGGGAAGAATATCACCCAAAGCTTTCTGACTTTGGCCTCGCAAAGCTGGGCCCTACTGGAGACAAATCACATGTTTCGACGAGGGTGATGGGCACTTACGGTTACTGCGCTCCCGAGTATGCCATGACTGGACAGTTGACTGTCAAATCTGATGTGTACAGTTTCGGTGTAGTCTTCTTAGAGCTTATTACTGGTCGCAAAGCTATTGATAGCACCCAACCCCAAGGAGCACAGAACCTTGTCACTTGGGCACGGCCGCTGTTCAATGACAGGAGGAAATTTGCGAAATTGGCGGACCCATGTCTGCAAGGTCAGTATCCAATGAGGGGACTTTACCAGGCTCTAGCAGTGGCATCCATGTGTATCCAAGAACAGGCTGCAGCTCGTCCTCTAATTGGTGATGTGGTTACTGCCTTATCTTATCTGGAAAACCAGGCATATGACGCAAGTACGGGTCCAGGAGGACATAATGAGAAAAGAAATGGAAGAATAATATTGAGGAACGAAGGAGGAGGAGGAGGAGTATCTGGACGCAAATGGGACTTGGAAGGATCCGAGAGGGACGACTCTCCCAAAGAAACGGCTAGGATGTTAAATAGAGATTTGGAAAGAGAGAGAGCAGTTGCAGAGGCCAAAATGTGGGGAGAGAATTGGCGCGAAAAAAGACGACAAGGTACTCAAGGCAGTTTCGATGCCAATAATGGGTAG

Network for GWHGAAZE013744

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	97	304	1.60E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13430	PBS1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.556
	SRR3591706	second leaf	20.963
	SRR3591707	mature leaf	38.072
	SRR3591708	Shoot apex	9.757
	SRR3591709	Stem	25.746
	SRR3591710	White floral bud	10.728
	SRR3591711	White flower	8.904
	SRR3591712	Green floral bud	9.664
	SRR3591713	Yellow flower	4.199
SRP173429	SRR8316895	Juvenile bud stage	51.069
	SRR8316896	Juvenile bud stage	60.992
	SRR8316897	Juvenile bud stage	43.485
	SRR8316894	Third green stage	9.955
	SRR8316900	Third green stage	24.986
	SRR8316901	Third green stage	37.410
	SRR8316898	Complete white stage	4.879
	SRR8316899	Complete white stage	50.618
	SRR8316903	Complete white stage	9.805
	SRR8316902	Silver flowering stage	3.454
	SRR8316904	Silver flowering stage	6.405
	SRR8316905	Silver flowering stage	2.902
	SRR8316906	Gold flowering stage	13.278
	SRR8316907	Gold flowering stage	12.908
	SRR8316908	Gold flowering stage	14.501
SRP132670	SRR6706286	Control	33.669
	SRR6706287	Light intensity 50%	31.532
	SRR6706288	Light intensity 20%	31.377
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.306
	CNS0095593	Slightly white alabastrum(diploid) 2	33.781
	CNS0095594	Slightly white alabastrum(diploid) 3	41.566
	CNS0095595	Whole white alabastrum(diploid) 2	33.911
	CNS0095596	Whole white alabastrum(diploid) 3	9.351
	CNS0095597	Whole white alabastrum(diploid) 4	21.319
	CNS0095598	Silvery flower (diploied) 1	65.117
	CNS0095599	Silvery flower (diploied) 2	66.735
	CNS0095600	Silvery flower (diploied) 3	23.167
	CNS0095601	Golden flower (diploid) 1	33.513
	CNS0095602	Golden flower (diploid) 2	30.596
	CNS0095603	Golden flower (diploid) 3	29.475
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.581
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.317
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.967
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.143
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.459
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.457
	CNS0095610	Silvery flower (tetraploid) 1	14.134
	CNS0095611	Silvery flower (tetraploid) 2	12.725
	CNS0095612	Silvery flower (tetraploid) 3	9.942
	CNS0095613	Golden flower (tetraploid) 1	8.646
	CNS0095614	Golden flower (tetraploid) 2	16.164
	CNS0095615	Golden flower (tetraploid) 3	10.211
CRA001975	CRR073297	Stem 1	34.055
	CRR073298	Stem 2	31.178
	CRR073299	Stem 3	25.731
	CRR073300	Leaf 1	36.702
	CRR073301	Leaf 2	57.547
	CRR073302	Leaf 3	21.295
	CRR073303	Juvenile bud 1	25.345
	CRR073304	Juvenile bud 2	21.822
	CRR073305	Juvenile bud 3	44.544
	CRR073306	Third green 1	7.635
	CRR073307	Third green 2	5.611
	CRR073308	Third green 3	7.616
	CRR073309	Second white 1	2.535
	CRR073310	Second white 2	6.314
	CRR073311	Second white 3	5.115
	CRR073312	Silver flowering 1	5.801
	CRR073313	Silver flowering 2	5.412
	CRR073314	Silver flowering 3	4.364
	CRR073315	Gold flowering 1	27.269
	CRR073316	Gold flowering 2	54.129
	CRR073317	Gold flowering 3	34.137
	CRR073318	Tawny withering 1	39.955
	CRR073319	Tawny withering 2	62.521
	CRR073320	Tawny withering 3	44.337