Gene detail

Detail information of GWHGAAZE013757

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002512671.1	zinc finger protein, putative [Ricinus communis]
Swissprot	tr\|Q8VYZ0\|ORTH2_ARATH	E3 ubiquitin-protein ligase ORTHRUS 2
trEMBL	tr\|B9RG02\|B9RG02_RICCO	Zinc finger protein, putative {ECO:0000313\|EMBL:EEF50123.1}
TAIR10	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107711054	107716160	-
GWHAAZE00000003	mRNA	107711054	107716160	-
GWHAAZE00000003	exon	107711054	107711572	-
GWHAAZE00000003	exon	107711765	107711998	-
GWHAAZE00000003	exon	107712106	107712255	-
GWHAAZE00000003	exon	107712448	107712550	-
GWHAAZE00000003	exon	107712651	107712712	-
GWHAAZE00000003	exon	107712786	107712885	-
GWHAAZE00000003	exon	107713243	107713368	-
GWHAAZE00000003	exon	107714433	107714965	-
GWHAAZE00000003	exon	107715135	107715199	-
GWHAAZE00000003	exon	107715614	107716160	-
GWHAAZE00000003	CDS	107715614	107716160	-
GWHAAZE00000003	CDS	107715135	107715199	-
GWHAAZE00000003	CDS	107714433	107714965	-
GWHAAZE00000003	CDS	107713243	107713368	-
GWHAAZE00000003	CDS	107712786	107712885	-
GWHAAZE00000003	CDS	107712651	107712712	-
GWHAAZE00000003	CDS	107712448	107712550	-
GWHAAZE00000003	CDS	107712106	107712255	-
GWHAAZE00000003	CDS	107711765	107711998	-
GWHAAZE00000003	CDS	107711054	107711572	-

Transcript Sequence
>GWHTAAZE013771 ATGGCGGGGGGACATTCTAGTGATCTTCCGATTGACGGAGATGGCATTTGTATGATGTGTAAGAACAAGCCTTCAGAAGCAGACACACTCACCTGCAAGACATGCGTAACACCATGGCACCTCACCTGCCTCTCCCTTTCACATCCTCCATCTCCATCTCCATCTCCATCTCCATCTCAATCCCTATCCTCCTCCCCTTGGGAATGCCCCGACTGCTCCTCCCTCAATCCTACTACTCTTCCTTCCTCATCCTCCGCCCCCCTCCGATCTGAATCCTCTAACCTCGTAGCTGCCATTCGTGCCATCGAATCCGACCCTTCCCTCTCTGACCACGACAAAGCAAAGAAACGACAATCCCTTATCACCAGCGGATGTCACAAGTTGACTTCTCCAGATGACAACGGCGGCTGCGGAAATCACAAGAATAATAACCAACTACTTGATCTTCTCGATGACAGTCTCAACTGCTCCTTTTGCATGCACCTTCCTGATAGACCTGTCACGGTATCTATCTATCTATCTATCTATCATTTCTTTAATATGCCGATGGAACCTCTGTTTTGGCCAAAACTAGAGCTCATTGGCCTTTCCAGCAGCTATTTCACTTGCTATACCCCCTGTGGTCACAATTTTTGCCTGAGATGCTTCCAGAAATGGGTTGGGCAGGGGAAGCGCACTTGTGCAAATTGTCGCAATACAATCCCACCCAAGATGGCAAGCCAGCCTCGGATAAACTCTGCCCTGGTTATTGCCATTCGAATGGCAAAGATGTCAAAATCTGCTACTTCTGGAGGCCAGCCAAAGGTATATCATTTTGTTCAAAACCAAAACCGACCCGACAAAGCATACACCACAGAGCGGGCAAAGAAAGCTGGAAAGGCAAATGCTTGTAGTGGAAAGATTTTTGTGACAGTCCCCCCTGATCATTTTGGACCAATCCTTGCGGAAAATGATCCTGAGAGAAAACAGGGTGTGTTGGTTGGGGAGACGTGGGAAGATCGGATGGAATGCAGACAATGGGGTGCTCATCTTCCTCATGTTGCAGGAATTTCTGGGCAGGCAGTTTATGGGGCACAATCTGTGGCACTGTCTGGTGGGTATGAAGATGATGAGGACCACGGTGAATGGTTCCTCTACACAGGAAGCGGCGGAAGAGACCTAAGCGGGAATAAAAGGACAAACAAGGATCAGTCTTTTGATCAGAAATTTGAGAAACAAAATGAGGCCTTGCGAGTCAGTTGCCGAAAAGGTTATCCTGTTCGAGTTGTGAGGTCCCACAAGGAGAAACGTTCTTCTTATGCACCAGAAACAGGAGTGCGATATGATGGGATTTATAGGATTGAAACATGCTGGCGCAAAGTTGGAATTCAAGGATTTAAGGTTTGCCGCTATCTTTTTGTGCGATGCGATAATGATCCTGCTCCGTGGACCAGTGATGACCATGGGGACCGTCCAAGAGCGTTGCCCATCATTGAGGAGTTAAAGAATGCAACTGATGTTACTGAAAGAAGGGGAACACCTTCATGGGATTATGATGAGGAAAAAGGGTACTGGATGTGGAAAAAACCTTCACCCCAAAGTAGGAAACAAGCAGAAAGTAGTGACGTGGAGGATGCAAAGAATAAAAGGAAAGCTAGACGTCAAACACAACCAATGTCTGTACAAGAGAGGCTTTTGAAAGGCATGGTACTTCCTCTTGCAGAATTCAGCTGTCTTATATGCCGGAAAGTGATGATTCAGCCACTTACTACTCCCTGTGCTCATAACTTTTGTAAGTCCTGTTTAGAGGGTATCTTTGCTGGTCAAAATTTCATAAGACAGAGGACATGTGAAGGCAGGCGGACATTACGAGCACAGAAGAATATAATGAAATGCCCATCCTGCACAAATGACATTTCTGATTTCCTTCAGAACCCCCAGGTTAACAGAGAATTGATGACTGTGATCGAATCACTTCATCGACAGACTAAAGAGATGGAAGAAATAGTTGAGCTAAGTGAAGAAACTTATGATGCAGATGGGAAAAAAGTAGAGCCAAGTGAAGAAGAAAATGATGGCCCAAAATCTGATGTGGTGGTTGGAGATGCAGAGATCTGCCATACAAATCCCGAGATGCTAGAGGAAGATAAAGAAGGCATTATGAAACCTCAACATGAAACCAAGCCAAAGCAAGAGGAAGAAGCAGCAAATGGCGGCGATGACGGATTGAAGAAGCAATGTCTTGAGAATTCTGATGATGCAATGAAGAATGGTGGCAATGACGAAGTCGTGGTGGAGCCTGAAATGTGTGATCGCAAGGAATTGCAAGGAAGTGGCAAAAATAACAAAACTAATAGACGGAAGAAGGCTAGTGAAGGAATCTGCTCATCAACAACTTTAGATACTGGCATCAGGACCAGAAGCAAGAAGGCCAAGTCGATGGCTGCTGATGACCCGTAA

Network for GWHGAAZE013757

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00097.26	zf-C3HC4	203	230	0.00012
PF02182.18	SAD_SRA	323	471	6.30E-53
PF13445.7	zf-RING_UBOX	571	626	1.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.642
	SRR3591706	second leaf	1.596
	SRR3591707	mature leaf	1.040
	SRR3591708	Shoot apex	17.938
	SRR3591709	Stem	3.438
	SRR3591710	White floral bud	1.331
	SRR3591711	White flower	0.938
	SRR3591712	Green floral bud	1.956
	SRR3591713	Yellow flower	0.480
SRP173429	SRR8316895	Juvenile bud stage	3.080
	SRR8316896	Juvenile bud stage	4.676
	SRR8316897	Juvenile bud stage	1.939
	SRR8316894	Third green stage	1.532
	SRR8316900	Third green stage	2.250
	SRR8316901	Third green stage	1.814
	SRR8316898	Complete white stage	0.118
	SRR8316899	Complete white stage	1.869
	SRR8316903	Complete white stage	0.183
	SRR8316902	Silver flowering stage	0.026
	SRR8316904	Silver flowering stage	0.192
	SRR8316905	Silver flowering stage	0.048
	SRR8316906	Gold flowering stage	0.436
	SRR8316907	Gold flowering stage	0.344
	SRR8316908	Gold flowering stage	0.416
SRP132670	SRR6706286	Control	2.188
	SRR6706287	Light intensity 50%	1.839
	SRR6706288	Light intensity 20%	2.258
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.133
	CNS0095593	Slightly white alabastrum(diploid) 2	3.659
	CNS0095594	Slightly white alabastrum(diploid) 3	3.215
	CNS0095595	Whole white alabastrum(diploid) 2	2.182
	CNS0095596	Whole white alabastrum(diploid) 3	2.590
	CNS0095597	Whole white alabastrum(diploid) 4	2.047
	CNS0095598	Silvery flower (diploied) 1	2.753
	CNS0095599	Silvery flower (diploied) 2	2.570
	CNS0095600	Silvery flower (diploied) 3	0.743
	CNS0095601	Golden flower (diploid) 1	1.910
	CNS0095602	Golden flower (diploid) 2	0.794
	CNS0095603	Golden flower (diploid) 3	0.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.439
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.633
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.608
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.799
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.977
	CNS0095610	Silvery flower (tetraploid) 1	0.233
	CNS0095611	Silvery flower (tetraploid) 2	0.662
	CNS0095612	Silvery flower (tetraploid) 3	0.371
	CNS0095613	Golden flower (tetraploid) 1	0.431
	CNS0095614	Golden flower (tetraploid) 2	0.390
	CNS0095615	Golden flower (tetraploid) 3	0.165
CRA001975	CRR073297	Stem 1	7.120
	CRR073298	Stem 2	6.566
	CRR073299	Stem 3	8.479
	CRR073300	Leaf 1	3.011
	CRR073301	Leaf 2	3.050
	CRR073302	Leaf 3	1.802
	CRR073303	Juvenile bud 1	1.890
	CRR073304	Juvenile bud 2	0.618
	CRR073305	Juvenile bud 3	1.753
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.081
	CRR073308	Third green 3	0.236
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.028
	CRR073312	Silver flowering 1	0.113
	CRR073313	Silver flowering 2	0.020
	CRR073314	Silver flowering 3	0.148
	CRR073315	Gold flowering 1	0.822
	CRR073316	Gold flowering 2	1.545
	CRR073317	Gold flowering 3	2.064
	CRR073318	Tawny withering 1	9.823
	CRR073319	Tawny withering 2	6.636
	CRR073320	Tawny withering 3	7.607