Gene detail

Detail information of GWHGAAZE013761

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009773559.1	PREDICTED: DNA replication licensing factor MCM2 [Nicotiana sylvestris]
Swissprot	tr\|Q2R482\|MCM2_ORYSJ	DNA replication licensing factor MCM2
trEMBL	tr\|M0ZQ54\|M0ZQ54_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400005594}
TAIR10	AT1G44900.1	minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107804018	107810114	+
GWHAAZE00000003	mRNA	107804018	107810114	+
GWHAAZE00000003	exon	107804018	107804343	+
GWHAAZE00000003	exon	107804474	107804661	+
GWHAAZE00000003	exon	107805329	107805507	+
GWHAAZE00000003	exon	107805631	107805811	+
GWHAAZE00000003	exon	107805986	107806205	+
GWHAAZE00000003	exon	107806297	107806504	+
GWHAAZE00000003	exon	107806587	107806721	+
GWHAAZE00000003	exon	107806825	107807016	+
GWHAAZE00000003	exon	107807108	107807280	+
GWHAAZE00000003	exon	107807361	107807549	+
GWHAAZE00000003	exon	107807629	107807745	+
GWHAAZE00000003	exon	107808191	107808275	+
GWHAAZE00000003	exon	107808374	107808526	+
GWHAAZE00000003	exon	107808627	107808752	+
GWHAAZE00000003	exon	107808851	107809033	+
GWHAAZE00000003	exon	107809440	107809598	+
GWHAAZE00000003	exon	107809712	107810114	+
GWHAAZE00000003	CDS	107804018	107804343	+
GWHAAZE00000003	CDS	107804474	107804661	+
GWHAAZE00000003	CDS	107805329	107805507	+
GWHAAZE00000003	CDS	107805631	107805811	+
GWHAAZE00000003	CDS	107805986	107806205	+
GWHAAZE00000003	CDS	107806297	107806504	+
GWHAAZE00000003	CDS	107806587	107806721	+
GWHAAZE00000003	CDS	107806825	107807016	+
GWHAAZE00000003	CDS	107807108	107807280	+
GWHAAZE00000003	CDS	107807361	107807549	+
GWHAAZE00000003	CDS	107807629	107807745	+
GWHAAZE00000003	CDS	107808191	107808275	+
GWHAAZE00000003	CDS	107808374	107808526	+
GWHAAZE00000003	CDS	107808627	107808752	+
GWHAAZE00000003	CDS	107808851	107809033	+
GWHAAZE00000003	CDS	107809440	107809598	+
GWHAAZE00000003	CDS	107809712	107809828	+
GWHAAZE00000003	three_prime_UTR	107809829	107810114	+

Transcript Sequence
>GWHTAAZE013775 ATGGCTGGGGAAGATTCAAGTGGTGGGACTGGGAAGCGTCCAGGCGATTCGCTGTCATCATCATCAGAAGAGCGATCAGGCAACAACAATCCAAATGATGTCCATGGCCATGTGGGGAATCCACCATCCACACCCGATTCTCCTACCTCTGTAGGTTTCAACACCGATCAACTCCCTTTCAACACTACTAGCCGCACTTCCGACAACTACTCTGACGAAGACGACGAGGAAGCTGCTGTCGATCCACATATTATCAGGGATGACGAGGAGGAGGAGGTTGACGAAGAGGAAGAAGGAGAGGATCTTTTCAACGACAATTACATGGATGATTATCGGAGGATGGAGGAACACGATCAGTACGAGCCTGTGGGGCTTGATGAATCCCTTGAAGACGAGAGAGACTTGGATCAGATTATGGCCGACCGAAGGGCTGCTGAAATTGAGCTTGATACCAGAGATGGTACCGGTCGCACCACCACTCACCGCAAGCTTCCCCACCTTCTCCATGACCAAGACACAGACGATGACAGCTACAGGCCTTCAAAAAGAACTAGAGCAGATTTTAGGCCTCCCTCCACTGCAAGAAGCTTTGATGATACTGATGCAATGCAGAGCTCGCCGGGTAGATCACAGCCAGGTCACTCAAGAGAGGATGTTCCCATGACTGATCAGACAGATGATGACCCATATGAAGATGAAGACAATGGTGAAGGTGAATTTGAAATGTACCGCGTTCAGGGGACGCTTAGGGAGTGGGTTACAAGGGATGAAGTGCGTCGCTTCATTGCCAAGAAGTTCAAAGAATTCATACTCACATATGAGAACCCTAACCATGACTTTGAATATCTGCGGCAGATAAATGAGATGGTATCAGTTAATAAATGTAGCCTTGAGATTGACTACAAGCAGTTCATCTTTGTCCATCCAAATATTGCCATCTGGTTGGCAGATGCGCCTCAATCCGTCCTTGAGGTTATGGAAGAAGTTGCTAATAAAGTTGTATTCGACTTGCATCCTAACTACAAACAAATCCACCAAAAAATTTATGTCCGAATAACCAATTTACCCGTTTATGATCAGATACGCAACATAAGACAGATCCATCTGAACACCATGATTCGTATAGGAGGAGTTGTGACCCGACGTTCTGGAGTTTTTCCCCAGTTGCAGCAAGTAAAGTACGATTGCAACAAATGTGGTATGATTTTGGGGCCATTTTTCCAGAATTCATATGCAGAAGTGAAGGTTGGCTCTTGCCCAGAGTGCCAATCAAAAGGACCTTTCACTGTCAATATTGAGCAGACATTATACAGAAATTATCAGAAACTTACTCTCCAAGAGAGCCCTGGAATTGTCCCTGCTGGTCGACTTCCAAGACACAAGGAAGTGATACTGCTGAATGATCTCATTGATTGCGCCCGCCCAGGGGAAGAGATTGAGGTCACAGGCATTTACACCAACAATTTTGATTTGTCTTTAAATACAAAGCATGGATTTCCCGTCTTTGCCACTGTGGTTGAAGCTAATTATGTTACAAAGAAGCAGGACCTCTTTTCGGCTTACAAACTTACCCAGGAGGACAAAGAAGAAATTGAAAAGTTGTCCAAAGATCCCAGGATTGGAGAGAGGATTGTGAAGTCAATTGCACCGTCAATCTATGGTCATGAGGACATTAAGACTGCAATAGCTCTGGCGATGTTTGGAGGTCAGGAGAAAAATGTTGAAGGGAATCATCGATTGCGAGGAGACATAAATGTACTCTTGTTAGGTGATCCAGGCACGGCTAAATCCCAGTTCCTCAAGTATGTTGAGAAGACTGGACAGAGGGCTGTTTATACAACTGGGAAAGGAGCTTCTGCTGTAGGGCTCACAGCAGCAGTGCACAAGGACCCCGTTACACGGGAGTGGACTCTTGAAGGAGGTGCACTTGTTCTGGCTGATAAAGGGATATGTCTGATTGATGAGTTTGACAAGATGAATGACCAAGACAGGGTAAGTATTCACGAAGCAATGGAGCAGCAAAGTATTAGCATATCCAAGGCAGGGATTGTCACCTCCCTTCAAGCCCGCTGTTCTGTCATTGCTGCTGCAAATCCAATTGGGGGAAGATATGATTCCTCAAAGAACTTTTCTCAAAATGTAGAGTTGACAGATCCTATTGTTTCGCGTTTTGATATCCTCTGCGTTGTCAAGGATGTGGTTGATCCAGTGGTAGATGAGATGCTTGCAAAGTTTGTAGTTGATAGCCACTTTAAGTCACAACCCAAAGGTGCGAACCTAGATGATAAGTCTGCTGGCAATTCCCAGGAAGACATTAAAGCCTCTGCTACGACAGCTGATCCTGAGATACTCCCTCAAGATTTGCTAAAGAAGTACTTAACTTATGCCAAGTTGAATGTATTCCCAAAGTTGCATGATGCTGATACAAACAAACTCCAACAAGTTTATGCTGAATTACGGAGAGAATCTTCACATGGACAAGGAGTTCCTATAGCAGTGAGGCACATAGAATCAATGATACGGATGTCTGAAGCTCATGCCAGGATGCATCTTAGACAACATGTCACTCAGGAAGATGTAGACATGGCAATTCGTGTCCTGCTTGACTCCTTTATTTCAACACAAAAATTTGGGGTGCAAAAAGCCTTAGAGAAGAGCTTCAAAAAGTATATGACCTTCAAGAAGGATTTCAATGGTATCGTACTGCATCTTCTGCGTCAACTAGTGAAGGATGCCCTGCATTTTCAAGAAATTTTATCAGGCTCTACTGCCAATGACCATATTGACGTGAAGGTGGACGAGTTACAGAACAAGGTACACGATTATGGAATCACCGACCTAACAACATTCTTCAACAGCACCGAATTCGCTAGAGCAAACTTTGAGTTGAAGGAGGAACAGGGGGTGATAAGGCATCGTCTTGCAAGATAAGAAGATACAATGACCAATGTTAGTTATTTGAATCACAGGCTTTAGAATGACAGGTTACTAAATATCTGTATTCTTGAAACTGGAGTTTGGGAGGGGACATATGCTCTTCAGGTGCCTTCACCCAAGACCACCTTCCGAAGTGCATGTCTCCTCAATTTCGGTGTTATTTTATATGGGATTTTAGTATTTCTAACATATAAGTGTACTTGTGAGGAATTTCCCCAGCAGCACAGCTCAAATTGGTACAAAACAAAACATGATGCAAGTAATGATATTTAGCTAAAAA

Network for GWHGAAZE013761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12619.9	MCM2_N	75	233	1.60E-22
PF14551.7	MCM_N	264	354	3.80E-14
PF17207.4	MCM_OB	360	487	1.30E-36
PF00493.24	MCM	528	750	2.40E-102
PF17855.2	MCM_lid	787	870	1.20E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02540	MCM2	DNA replication	map03030
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	biological_process	DNA replication initiation
GO:1905775	biological_process	negative regulation of DNA helicase activity
GO:0006260	biological_process	DNA replication
GO:0005634	cellular_component	nucleus
GO:0042555	cellular_component	MCM complex
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.078
	SRR3591706	second leaf	5.137
	SRR3591707	mature leaf	1.090
	SRR3591708	Shoot apex	38.343
	SRR3591709	Stem	5.453
	SRR3591710	White floral bud	1.426
	SRR3591711	White flower	0.508
	SRR3591712	Green floral bud	1.607
	SRR3591713	Yellow flower	0.081
SRP173429	SRR8316895	Juvenile bud stage	6.417
	SRR8316896	Juvenile bud stage	6.342
	SRR8316897	Juvenile bud stage	3.270
	SRR8316894	Third green stage	1.457
	SRR8316900	Third green stage	1.398
	SRR8316901	Third green stage	0.771
	SRR8316898	Complete white stage	0.080
	SRR8316899	Complete white stage	1.377
	SRR8316903	Complete white stage	0.348
	SRR8316902	Silver flowering stage	0.159
	SRR8316904	Silver flowering stage	0.160
	SRR8316905	Silver flowering stage	0.075
	SRR8316906	Gold flowering stage	0.187
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.165
SRP132670	SRR6706286	Control	1.702
	SRR6706287	Light intensity 50%	2.077
	SRR6706288	Light intensity 20%	2.570
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.371
	CNS0095593	Slightly white alabastrum(diploid) 2	3.849
	CNS0095594	Slightly white alabastrum(diploid) 3	3.524
	CNS0095595	Whole white alabastrum(diploid) 2	2.087
	CNS0095596	Whole white alabastrum(diploid) 3	0.284
	CNS0095597	Whole white alabastrum(diploid) 4	1.453
	CNS0095598	Silvery flower (diploied) 1	7.827
	CNS0095599	Silvery flower (diploied) 2	11.669
	CNS0095600	Silvery flower (diploied) 3	2.461
	CNS0095601	Golden flower (diploid) 1	3.993
	CNS0095602	Golden flower (diploid) 2	1.363
	CNS0095603	Golden flower (diploid) 3	1.466
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.232
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.401
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.448
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.069
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.380
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.871
	CNS0095610	Silvery flower (tetraploid) 1	0.304
	CNS0095611	Silvery flower (tetraploid) 2	0.497
	CNS0095612	Silvery flower (tetraploid) 3	0.686
	CNS0095613	Golden flower (tetraploid) 1	0.018
	CNS0095614	Golden flower (tetraploid) 2	0.107
	CNS0095615	Golden flower (tetraploid) 3	0.090
CRA001975	CRR073297	Stem 1	11.753
	CRR073298	Stem 2	9.957
	CRR073299	Stem 3	12.015
	CRR073300	Leaf 1	1.028
	CRR073301	Leaf 2	0.986
	CRR073302	Leaf 3	0.577
	CRR073303	Juvenile bud 1	0.419
	CRR073304	Juvenile bud 2	0.093
	CRR073305	Juvenile bud 3	0.533
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.438
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.709
	CRR073316	Gold flowering 2	0.812
	CRR073317	Gold flowering 3	0.438
	CRR073318	Tawny withering 1	9.622
	CRR073319	Tawny withering 2	6.371
	CRR073320	Tawny withering 3	13.044