Gene detail

Detail information of GWHGAAZE013821

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP36797.1	1.2541E-127	hypothetical protein JCGZ_08088 [Jatropha curcas]
trEMBL	tr\|A0A067KL12\|A0A067KL12_JATCU	5E-128	Uncharacterized protein {ECO:0000313\|EMBL:KDP36797.1}
TAIR10	AT1G20575.1	1E-101	Nucleotide-diphospho-sugar transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1119403	1121367	+
GWHAAZE00000004	mRNA	1119403	1121367	+
GWHAAZE00000004	exon	1119403	1119673	+
GWHAAZE00000004	exon	1119746	1119822	+
GWHAAZE00000004	exon	1120256	1120281	+
GWHAAZE00000004	exon	1120355	1120519	+
GWHAAZE00000004	exon	1120611	1120767	+
GWHAAZE00000004	exon	1121236	1121367	+
GWHAAZE00000004	CDS	1119403	1119673	+
GWHAAZE00000004	CDS	1119746	1119822	+
GWHAAZE00000004	CDS	1120256	1120281	+
GWHAAZE00000004	CDS	1120355	1120519	+
GWHAAZE00000004	CDS	1120611	1120767	+
GWHAAZE00000004	CDS	1121236	1121367	+

Transcript Sequence
>GWHTAAZE013835 CATAGTGTCCTGAGTAACATTCCTTGCTGCCTGGTCAGGGATGTTGACTTTGAAATAATTGTTGTGGATGATGGAAGTCCTGATGGAACTCAAGATATAGTCAAACAGTTGCAGCTGGTCTATGGTGAAAATCGCATTGTAAGTACAAAGTTAGTTGATTCACTCGTGAATGCAGTTCATGTTGCTTATTTTGAGCTTGTTGTAACCCCTATTGCTATTGCTTCTTACCTAGTACAGCTGTTAAGAGCACGACCTAGAAAGCTTGGATTAGGTACCGCTTACATTCATGGTTTGAAGCATGCATCTGGCAATTTTGTTGTTATCATGGATGCCGATCTGTCGCACCATCCAAAGTACCTGCCAAGCTTCATCAAAAAACAGATGGAGACAGGTGCAAGTATTGTTACTGGAACCCGCTATGTTAAAGGTGGTGGCGTGCATGGGTGGAATCTCATGCGCAAATTGACAAGTAGGGGAGCAAATGTCCTTGCACATACACTTCTTTGGCCTGGTGTATCCGACCTAACAGGATCTTACCGGCTTTATCGAAAATCTGTGCTTGAAGACGTTATAGCTTCTTGTGTTAGCAAGGGATATGTTTTTCAGATGGAGATGATTGTTCGGGCTTCAAGAAAAGGGTACCATATTGAAGAGGTAGTCTTATACATTCGTATTTTGTCAGCTTACAGTCTTGAGTTTCAAGTTGGATATTATGGTCCACAGGTTCCAATTACCTTTGTTGACAGAGTATATGGAAGTTCAAAGCTTGGAGGATCGGAAATAGTCGAGTATTTAAAAGGCCTTGTGTATCTTCTGGTTACGACATAA

Network for GWHGAAZE013821

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00535.27	Glycos_transf_2	16	39	1.10E-05
PF00535.27	Glycos_transf_2	83	190	3.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00721	DPM1	Metabolic pathways	map01100
K00721	DPM1	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.239
	SRR3591706	second leaf	8.443
	SRR3591707	mature leaf	10.880
	SRR3591708	Shoot apex	25.358
	SRR3591709	Stem	24.906
	SRR3591710	White floral bud	25.534
	SRR3591711	White flower	38.195
	SRR3591712	Green floral bud	21.523
	SRR3591713	Yellow flower	23.519
SRP173429	SRR8316895	Juvenile bud stage	20.027
	SRR8316896	Juvenile bud stage	26.497
	SRR8316897	Juvenile bud stage	12.512
	SRR8316894	Third green stage	10.498
	SRR8316900	Third green stage	28.482
	SRR8316901	Third green stage	24.334
	SRR8316898	Complete white stage	11.841
	SRR8316899	Complete white stage	31.929
	SRR8316903	Complete white stage	18.193
	SRR8316902	Silver flowering stage	15.938
	SRR8316904	Silver flowering stage	18.321
	SRR8316905	Silver flowering stage	8.608
	SRR8316906	Gold flowering stage	29.155
	SRR8316907	Gold flowering stage	24.563
	SRR8316908	Gold flowering stage	26.882
SRP132670	SRR6706286	Control	22.597
	SRR6706287	Light intensity 50%	22.802
	SRR6706288	Light intensity 20%	25.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.922
	CNS0095593	Slightly white alabastrum(diploid) 2	25.141
	CNS0095594	Slightly white alabastrum(diploid) 3	24.624
	CNS0095595	Whole white alabastrum(diploid) 2	21.593
	CNS0095596	Whole white alabastrum(diploid) 3	18.698
	CNS0095597	Whole white alabastrum(diploid) 4	21.250
	CNS0095598	Silvery flower (diploied) 1	24.877
	CNS0095599	Silvery flower (diploied) 2	19.781
	CNS0095600	Silvery flower (diploied) 3	23.826
	CNS0095601	Golden flower (diploid) 1	16.691
	CNS0095602	Golden flower (diploid) 2	18.487
	CNS0095603	Golden flower (diploid) 3	19.991
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.428
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.975
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.328
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.133
	CNS0095610	Silvery flower (tetraploid) 1	24.149
	CNS0095611	Silvery flower (tetraploid) 2	22.973
	CNS0095612	Silvery flower (tetraploid) 3	18.876
	CNS0095613	Golden flower (tetraploid) 1	15.229
	CNS0095614	Golden flower (tetraploid) 2	20.594
	CNS0095615	Golden flower (tetraploid) 3	14.496
CRA001975	CRR073297	Stem 1	18.288
	CRR073298	Stem 2	20.945
	CRR073299	Stem 3	17.482
	CRR073300	Leaf 1	19.737
	CRR073301	Leaf 2	20.173
	CRR073302	Leaf 3	21.146
	CRR073303	Juvenile bud 1	19.381
	CRR073304	Juvenile bud 2	16.525
	CRR073305	Juvenile bud 3	15.737
	CRR073306	Third green 1	8.015
	CRR073307	Third green 2	9.743
	CRR073308	Third green 3	9.983
	CRR073309	Second white 1	10.300
	CRR073310	Second white 2	11.129
	CRR073311	Second white 3	6.171
	CRR073312	Silver flowering 1	7.079
	CRR073313	Silver flowering 2	7.288
	CRR073314	Silver flowering 3	3.855
	CRR073315	Gold flowering 1	12.108
	CRR073316	Gold flowering 2	12.168
	CRR073317	Gold flowering 3	8.057
	CRR073318	Tawny withering 1	23.580
	CRR073319	Tawny withering 2	21.737
	CRR073320	Tawny withering 3	18.945