Gene detail

Detail information of GWHGAAZE013832

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG14731.1	hypothetical protein F383_06315 [Gossypium arboreum]
Swissprot	tr\|Q944A7\|Y4523_ARATH	Probable serine/threonine-protein kinase At4g35230
trEMBL	tr\|A0A061FL71\|A0A061FL71_THECC	BR-signaling kinase 1 {ECO:0000313\|EMBL:EOY15214.1}
TAIR10	AT4G35230.1	BR-signaling kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1273368	1279258	+
GWHAAZE00000004	mRNA	1273368	1279258	+
GWHAAZE00000004	exon	1273368	1273682	+
GWHAAZE00000004	exon	1273779	1273848	+
GWHAAZE00000004	exon	1274450	1274583	+
GWHAAZE00000004	exon	1274721	1274826	+
GWHAAZE00000004	exon	1276680	1276765	+
GWHAAZE00000004	exon	1277332	1277520	+
GWHAAZE00000004	exon	1277681	1277845	+
GWHAAZE00000004	exon	1277944	1278057	+
GWHAAZE00000004	exon	1279010	1279258	+
GWHAAZE00000004	CDS	1273368	1273682	+
GWHAAZE00000004	CDS	1273779	1273848	+
GWHAAZE00000004	CDS	1274450	1274583	+
GWHAAZE00000004	CDS	1274721	1274826	+
GWHAAZE00000004	CDS	1276680	1276765	+
GWHAAZE00000004	CDS	1277332	1277520	+
GWHAAZE00000004	CDS	1277681	1277845	+
GWHAAZE00000004	CDS	1277944	1278057	+
GWHAAZE00000004	CDS	1279010	1279258	+

Transcript Sequence
>GWHTAAZE013846 ATGGGTTGTTGCGAATCCTCTTTCTCCAGAGAACATTCTCTTTCCGACAACAAGGATCAAAGGAAACCTCACCCCTCCAACGGCACCGCCGGAGGACCCGCTGTAGGTGACGGACCCGGTGGTATCCCCTCCTTCTCAGAGTATTCTCTGGCCGACCTCAAATCAGCCACCAACAACTTCAGCTCCGATTTCATCGTATCCGAGAGTGGCGAAAAAGCCCCAAATGTCGTCTACAAGGGCCGCCTCCAGAATCGCCGCTGGATTGCTGTCAAGAAGTTCACTAAAATGGCCTGGCCCGATCCTAAACAGTTTGCTGACGAAGCCTGGGGCGTTGGGAAGTTGAGGCATAAAAGGCTAGCCAATTTGATTGGCTACTGCTGTGACGGGGAGAATCAAACTATTGAGTGGGCCATGCGTTTAAGAGTTGCTTTATTTATTGGTGAAGCATTGGAATATTGTAGTAAGGAAGGCCGTCCATTGTACCATGACTTGAATGCCTACAGGGTTCTCTTTGATGAGAATGGTGATCCACGACTTTCATGTTTTGGTTTGATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATCTTGCATATACACCTCCTGAATATTTAAGAAATGGGAGGGTTACTCCAGAAAGTGTGATCTTCAGTTTTGGGACCGTCCTTTTGGATCTTCTTAGTGGAAAGCATATTCCTCCAAGTCATGCTCTTGATATGATACGGGGTAAAAACATTCTTTTGTTGATGGATTCGCATTTGGAGGGCAACTTTTCAACGGAGGAGGCCACTGTAGTTTTTGATCTTGCATCACGATGTTTGCAATATGAACCTAGAGAGCGGCCAAATACCAAAGATCTTGTTGAAACACTCGCCCCGCTGCAAAATAAACTGGATGTTGCATCTTATGTTATGTTGGGGATTCCAAAGCATGAGGAAGCACCACCTACTCCACAACACCCTCTTTCTCCAATGGGTGATGCCTGTTCACGAATGGACCTCACAGCTATCCATCAGATTTTGGTGATGACGCACTACAAAGATGATGAAGGAACGAACGAGTTATCTTTCCAAGAGTGGACCCAACAGATGAGGGATATGTTGGAGGCCAGGAAGCGGGGGGACTTGGCCTTCCGGGACAAGGATTTCAGAACTGCCATTGATTGTTATTCTCAGTTCATAGATGTGGGAACCATGGTATCACCAACTGTGTATGCAAGGAGGAGTCTTTGCCACCTCCTTTGTGATCAACCAGATGCAGCTCTGCGTGATGCAATGCAAGCACAATGTGTGTATGCAGATTGGTCCACAGCCTTTTACATGCAGGCAGTCGCCCTTGCCAAGCTCGACATGCACAAGGATGCCGTTGATATGTTAAATGAGGCTGCAGCACTTGAAGAAAAAAGGCAACGTGGTGGCAGATAA

Network for GWHGAAZE013832

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	142	290	2.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
K14500	BSK	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.083
	SRR3591706	second leaf	10.491
	SRR3591707	mature leaf	10.450
	SRR3591708	Shoot apex	20.991
	SRR3591709	Stem	24.357
	SRR3591710	White floral bud	32.462
	SRR3591711	White flower	35.204
	SRR3591712	Green floral bud	27.749
	SRR3591713	Yellow flower	29.743
SRP173429	SRR8316895	Juvenile bud stage	17.281
	SRR8316896	Juvenile bud stage	28.391
	SRR8316897	Juvenile bud stage	12.098
	SRR8316894	Third green stage	9.704
	SRR8316900	Third green stage	29.578
	SRR8316901	Third green stage	29.946
	SRR8316898	Complete white stage	14.816
	SRR8316899	Complete white stage	45.785
	SRR8316903	Complete white stage	25.279
	SRR8316902	Silver flowering stage	16.744
	SRR8316904	Silver flowering stage	20.694
	SRR8316905	Silver flowering stage	9.545
	SRR8316906	Gold flowering stage	41.823
	SRR8316907	Gold flowering stage	41.848
	SRR8316908	Gold flowering stage	36.097
SRP132670	SRR6706286	Control	25.171
	SRR6706287	Light intensity 50%	26.453
	SRR6706288	Light intensity 20%	24.867
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.039
	CNS0095593	Slightly white alabastrum(diploid) 2	28.879
	CNS0095594	Slightly white alabastrum(diploid) 3	23.937
	CNS0095595	Whole white alabastrum(diploid) 2	22.110
	CNS0095596	Whole white alabastrum(diploid) 3	17.129
	CNS0095597	Whole white alabastrum(diploid) 4	24.399
	CNS0095598	Silvery flower (diploied) 1	30.153
	CNS0095599	Silvery flower (diploied) 2	27.461
	CNS0095600	Silvery flower (diploied) 3	38.425
	CNS0095601	Golden flower (diploid) 1	31.604
	CNS0095602	Golden flower (diploid) 2	39.296
	CNS0095603	Golden flower (diploid) 3	40.923
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.347
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.796
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.786
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.967
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.092
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.949
	CNS0095610	Silvery flower (tetraploid) 1	29.994
	CNS0095611	Silvery flower (tetraploid) 2	33.608
	CNS0095612	Silvery flower (tetraploid) 3	27.537
	CNS0095613	Golden flower (tetraploid) 1	19.522
	CNS0095614	Golden flower (tetraploid) 2	23.906
	CNS0095615	Golden flower (tetraploid) 3	29.219
CRA001975	CRR073297	Stem 1	34.950
	CRR073298	Stem 2	29.117
	CRR073299	Stem 3	35.612
	CRR073300	Leaf 1	35.867
	CRR073301	Leaf 2	39.304
	CRR073302	Leaf 3	35.233
	CRR073303	Juvenile bud 1	37.136
	CRR073304	Juvenile bud 2	35.692
	CRR073305	Juvenile bud 3	43.726
	CRR073306	Third green 1	33.430
	CRR073307	Third green 2	31.824
	CRR073308	Third green 3	29.728
	CRR073309	Second white 1	42.515
	CRR073310	Second white 2	38.636
	CRR073311	Second white 3	40.236
	CRR073312	Silver flowering 1	33.716
	CRR073313	Silver flowering 2	30.894
	CRR073314	Silver flowering 3	26.528
	CRR073315	Gold flowering 1	22.778
	CRR073316	Gold flowering 2	26.193
	CRR073317	Gold flowering 3	24.551
	CRR073318	Tawny withering 1	46.427
	CRR073319	Tawny withering 2	52.386
	CRR073320	Tawny withering 3	49.412