Detail information of GWHGAAZE013856


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002510603.13.55853E-90Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
Swissprottr|P17340|PLAS_SOLLC9E-84Plastocyanin, chloroplastic (Precursor)
trEMBLtr|B9R8G0|B9R8G0_RICCO1E-90Plastocyanin A, chloroplast, putative {ECO:0000313|EMBL:EEF52790.1}
TAIR10AT1G20340.11E-52Cupredoxin superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene16682661668772+
GWHAAZE00000004mRNA16682661668772+
GWHAAZE00000004exon16682661668772+
GWHAAZE00000004CDS16682661668772+
Transcript Sequence

Network for GWHGAAZE013856

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00127.21Copper-bind711684.40E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02638petE Photosynthesis map00195

Gene Ontology

GO term OntologyName
GO:0005507molecular_functioncopper ion binding
GO:0009055molecular_functionelectron transfer activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1214.538
SRR3591706second leaf7275.019
SRR3591707mature leaf4074.295
SRR3591708Shoot apex2688.853
SRR3591709Stem665.981
SRR3591710White floral bud202.460
SRR3591711White flower237.617
SRR3591712Green floral bud177.958
SRR3591713Yellow flower321.837
SRP173429 SRR8316895Juvenile bud stage 462.950
SRR8316896Juvenile bud stage 362.458
SRR8316897Juvenile bud stage 275.083
SRR8316894Third green stage 116.429
SRR8316900Third green stage 241.439
SRR8316901Third green stage 204.323
SRR8316898Complete white stage 95.966
SRR8316899Complete white stage 165.784
SRR8316903Complete white stage 150.499
SRR8316902Silver flowering stage102.370
SRR8316904Silver flowering stage120.748
SRR8316905Silver flowering stage65.623
SRR8316906Gold flowering stage 177.022
SRR8316907Gold flowering stage 183.001
SRR8316908Gold flowering stage 170.041
SRP132670SRR6706286Control276.544
SRR6706287Light intensity 50%186.252
SRR6706288Light intensity 20%173.925
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1506.415
CNS0095593Slightly white alabastrum(diploid) 2354.793
CNS0095594Slightly white alabastrum(diploid) 3314.197
CNS0095595Whole white alabastrum(diploid) 2197.904
CNS0095596Whole white alabastrum(diploid) 3230.570
CNS0095597Whole white alabastrum(diploid) 4146.175
CNS0095598Silvery flower (diploied) 1766.035
CNS0095599Silvery flower (diploied) 2732.148
CNS0095600Silvery flower (diploied) 3686.838
CNS0095601Golden flower (diploid) 1664.684
CNS0095602Golden flower (diploid) 2856.323
CNS0095603Golden flower (diploid) 3818.551
CNS0095604Slightly white alabastrum(tetraploid) 1461.439
CNS0095605Slightly white alabastrum(tetraploid) 2536.846
CNS0095606Slightly white alabastrum(tetraploid) 3662.402
CNS0095607Whole white alabastrum(tetraploid) 1231.069
CNS0095608Whole white alabastrum(tetraploid) 2188.615
CNS0095609Whole white alabastrum(tetraploid) 3293.135
CNS0095610Silvery flower (tetraploid) 1836.946
CNS0095611Silvery flower (tetraploid) 21342.027
CNS0095612Silvery flower (tetraploid) 3593.071
CNS0095613Golden flower (tetraploid) 1752.435
CNS0095614Golden flower (tetraploid) 2844.134
CNS0095615Golden flower (tetraploid) 31123.592
CRA001975CRR073297Stem 1603.522
CRR073298Stem 2525.803
CRR073299Stem 31000.082
CRR073300Leaf 1122.361
CRR073301Leaf 2181.797
CRR073302Leaf 3183.995
CRR073303Juvenile bud 1144.520
CRR073304Juvenile bud 2110.868
CRR073305Juvenile bud 3238.145
CRR073306Third green 1124.253
CRR073307Third green 2142.133
CRR073308Third green 3130.334
CRR073309Second white 1297.279
CRR073310Second white 2121.767
CRR073311Second white 3111.694
CRR073312Silver flowering 1216.329
CRR073313Silver flowering 2264.444
CRR073314Silver flowering 3189.533
CRR073315Gold flowering 15429.125
CRR073316Gold flowering 24933.702
CRR073317Gold flowering 36869.142
CRR073318Tawny withering 1472.570
CRR073319Tawny withering 2337.446
CRR073320Tawny withering 3493.297