Gene detail

Detail information of GWHGAAZE013865

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07346.1	7.9549E-179	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LN20\|P4H3_ARATH	7E-172	Probable prolyl 4-hydroxylase 3 (Precursor)
trEMBL	tr\|A0A068UFV2\|A0A068UFV2_COFCA	3E-179	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07346.1}
TAIR10	AT1G20270.1	8E-120	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1773485	1776863	+
GWHAAZE00000004	mRNA	1773485	1776863	+
GWHAAZE00000004	exon	1773485	1773681	+
GWHAAZE00000004	exon	1773785	1773884	+
GWHAAZE00000004	exon	1774963	1775060	+
GWHAAZE00000004	exon	1775203	1775300	+
GWHAAZE00000004	exon	1776055	1776184	+
GWHAAZE00000004	exon	1776317	1776504	+
GWHAAZE00000004	exon	1776790	1776863	+
GWHAAZE00000004	CDS	1773485	1773681	+
GWHAAZE00000004	CDS	1773785	1773884	+
GWHAAZE00000004	CDS	1774963	1775060	+
GWHAAZE00000004	CDS	1775203	1775300	+
GWHAAZE00000004	CDS	1776055	1776184	+
GWHAAZE00000004	CDS	1776317	1776504	+
GWHAAZE00000004	CDS	1776790	1776863	+

Transcript Sequence
>GWHTAAZE013879 ATGCCGAAAAGGAATATATCTCGGCATCAGGCCAAGAGAACGTCGACCGTTGCTCTAGTTCTCTCGATGCTTCTCATGCTAACCGTAGTTCTCTTAATGCTTCTCGCTCTCGGAATTCTCTCTCTCCCTATCGCCTCTGATGACGATTCCTCCCCGATTCGAGATCGAATCACCTTCAAGCGCAGGAGCCTTGTTATTGGTGATGGCGATAAGTCGGGGTCTGTGAAGAAGAGAGGAGATCAGTGGACTGAAGTCCTCTCCTGGGAACCTAGAGCTTTCATTTATCACAATTTTCTGTCCAAGGAGGAATGCGACTATTTGATAGATCTTGCAAAGCCTCACATGGTAAAGTCATCAGTTGTTGATAGTAAAACTGGTCAGAGTAAAGATAGCAGGGTTCGTACAAGCTCTGGAACTTTTTTGCGTAGGGGACGAGATAAAATCATCCAGGACATAGAGAAAAGGATAGCAGACTTTACTTTCATTCCAGCAGACCACGGAGAAGGACTACAAGTCCTCCATTATGAGGTTGGGCAAAAGTATGAGCCTCACTATGACTACTTTCTTGACGAATTTAACACTAAAAATGGGGGGCAAAGGATTGCTACTGTTCTCATGTATCTGACAGATGTTGAGGAAGGAGGTGAGACTGTGTTTCCTGCTGCAAAGGCAAATTTTAGTTCTGTGCCATGGTGGAATGAGTTGTCTGATTGTGCCAAAAAGGGCCTCTCTGTGAAGCCAAAAATGGGTGATGCATTGCTTTTCTGGAGCATGAGGCCCGATGCGACTTTAGATCCATCAAGTTTGCATGGTGGTTGCCCTGTTATCAAAGGGAACAAGTGGTCGTCTACTAAATGGTTGCACGTTGAGGAATATAGAATTTGA

Network for GWHGAAZE013865

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.7	2OG-FeII_Oxy_3	170	288	3.20E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418	molecular_function	L-ascorbic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.909
	SRR3591706	second leaf	12.704
	SRR3591707	mature leaf	19.606
	SRR3591708	Shoot apex	17.426
	SRR3591709	Stem	21.142
	SRR3591710	White floral bud	28.244
	SRR3591711	White flower	30.253
	SRR3591712	Green floral bud	28.033
	SRR3591713	Yellow flower	30.653
SRP173429	SRR8316895	Juvenile bud stage	17.970
	SRR8316896	Juvenile bud stage	28.199
	SRR8316897	Juvenile bud stage	15.535
	SRR8316894	Third green stage	10.437
	SRR8316900	Third green stage	32.266
	SRR8316901	Third green stage	34.658
	SRR8316898	Complete white stage	14.792
	SRR8316899	Complete white stage	30.090
	SRR8316903	Complete white stage	21.649
	SRR8316902	Silver flowering stage	13.802
	SRR8316904	Silver flowering stage	16.732
	SRR8316905	Silver flowering stage	8.526
	SRR8316906	Gold flowering stage	31.329
	SRR8316907	Gold flowering stage	31.818
	SRR8316908	Gold flowering stage	33.632
SRP132670	SRR6706286	Control	17.598
	SRR6706287	Light intensity 50%	17.228
	SRR6706288	Light intensity 20%	16.950
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.528
	CNS0095593	Slightly white alabastrum(diploid) 2	25.387
	CNS0095594	Slightly white alabastrum(diploid) 3	32.781
	CNS0095595	Whole white alabastrum(diploid) 2	33.333
	CNS0095596	Whole white alabastrum(diploid) 3	30.793
	CNS0095597	Whole white alabastrum(diploid) 4	28.901
	CNS0095598	Silvery flower (diploied) 1	14.236
	CNS0095599	Silvery flower (diploied) 2	17.417
	CNS0095600	Silvery flower (diploied) 3	27.153
	CNS0095601	Golden flower (diploid) 1	19.031
	CNS0095602	Golden flower (diploid) 2	27.817
	CNS0095603	Golden flower (diploid) 3	29.094
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.365
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.822
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.299
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.878
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.624
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.491
	CNS0095610	Silvery flower (tetraploid) 1	32.755
	CNS0095611	Silvery flower (tetraploid) 2	31.456
	CNS0095612	Silvery flower (tetraploid) 3	35.013
	CNS0095613	Golden flower (tetraploid) 1	22.524
	CNS0095614	Golden flower (tetraploid) 2	31.108
	CNS0095615	Golden flower (tetraploid) 3	23.264
CRA001975	CRR073297	Stem 1	24.562
	CRR073298	Stem 2	20.038
	CRR073299	Stem 3	16.196
	CRR073300	Leaf 1	24.537
	CRR073301	Leaf 2	24.406
	CRR073302	Leaf 3	20.725
	CRR073303	Juvenile bud 1	21.505
	CRR073304	Juvenile bud 2	16.093
	CRR073305	Juvenile bud 3	20.568
	CRR073306	Third green 1	16.219
	CRR073307	Third green 2	14.085
	CRR073308	Third green 3	18.445
	CRR073309	Second white 1	15.614
	CRR073310	Second white 2	14.176
	CRR073311	Second white 3	14.702
	CRR073312	Silver flowering 1	12.520
	CRR073313	Silver flowering 2	21.311
	CRR073314	Silver flowering 3	15.531
	CRR073315	Gold flowering 1	13.058
	CRR073316	Gold flowering 2	13.660
	CRR073317	Gold flowering 3	17.138
	CRR073318	Tawny withering 1	18.712
	CRR073319	Tawny withering 2	20.900
	CRR073320	Tawny withering 3	16.016