Detail information of GWHGAAZE013879


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14668.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068V487|A0A068V487_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_90 {ECO:0000313|EMBL:CDP14668.1}
TAIR10AT1G09620.10ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene20970982100352+
GWHAAZE00000004mRNA20970982100352+
GWHAAZE00000004exon20970982100352+
GWHAAZE00000004CDS20970982100352+
Transcript Sequence

Network for GWHGAAZE013879

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00133.23tRNA-synt_1241061.30E-08
PF00133.23tRNA-synt_11967563.90E-29
PF08264.14Anticodon_17969359.80E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01869LARS, leuS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006429biological_processleucyl-tRNA aminoacylation
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0000166molecular_functionnucleotide binding
GO:0004823molecular_functionleucine-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0002161molecular_functionaminoacyl-tRNA editing activity
GO:0004812molecular_functionaminoacyl-tRNA ligase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE013879.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560657075Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.326
SRR3591706second leaf12.411
SRR3591707mature leaf14.230
SRR3591708Shoot apex23.652
SRR3591709Stem23.136
SRR3591710White floral bud34.266
SRR3591711White flower41.561
SRR3591712Green floral bud38.481
SRR3591713Yellow flower25.824
SRP173429 SRR8316895Juvenile bud stage 23.619
SRR8316896Juvenile bud stage 34.619
SRR8316897Juvenile bud stage 14.385
SRR8316894Third green stage 13.799
SRR8316900Third green stage 43.866
SRR8316901Third green stage 37.236
SRR8316898Complete white stage 12.692
SRR8316899Complete white stage 43.928
SRR8316903Complete white stage 30.063
SRR8316902Silver flowering stage19.149
SRR8316904Silver flowering stage27.558
SRR8316905Silver flowering stage12.217
SRR8316906Gold flowering stage 37.007
SRR8316907Gold flowering stage 37.154
SRR8316908Gold flowering stage 38.084
SRP132670SRR6706286Control45.976
SRR6706287Light intensity 50%48.994
SRR6706288Light intensity 20%53.267
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.177
CNS0095593Slightly white alabastrum(diploid) 227.882
CNS0095594Slightly white alabastrum(diploid) 322.321
CNS0095595Whole white alabastrum(diploid) 224.633
CNS0095596Whole white alabastrum(diploid) 325.161
CNS0095597Whole white alabastrum(diploid) 420.917
CNS0095598Silvery flower (diploied) 132.365
CNS0095599Silvery flower (diploied) 227.643
CNS0095600Silvery flower (diploied) 362.053
CNS0095601Golden flower (diploid) 123.204
CNS0095602Golden flower (diploid) 248.572
CNS0095603Golden flower (diploid) 345.947
CNS0095604Slightly white alabastrum(tetraploid) 130.291
CNS0095605Slightly white alabastrum(tetraploid) 224.164
CNS0095606Slightly white alabastrum(tetraploid) 357.485
CNS0095607Whole white alabastrum(tetraploid) 118.468
CNS0095608Whole white alabastrum(tetraploid) 216.024
CNS0095609Whole white alabastrum(tetraploid) 349.433
CNS0095610Silvery flower (tetraploid) 157.402
CNS0095611Silvery flower (tetraploid) 255.491
CNS0095612Silvery flower (tetraploid) 366.182
CNS0095613Golden flower (tetraploid) 125.729
CNS0095614Golden flower (tetraploid) 242.920
CNS0095615Golden flower (tetraploid) 353.950
CRA001975CRR073297Stem 141.054
CRR073298Stem 239.967
CRR073299Stem 345.185
CRR073300Leaf 147.704
CRR073301Leaf 243.507
CRR073302Leaf 345.641
CRR073303Juvenile bud 152.511
CRR073304Juvenile bud 236.216
CRR073305Juvenile bud 367.821
CRR073306Third green 125.556
CRR073307Third green 222.030
CRR073308Third green 329.008
CRR073309Second white 138.806
CRR073310Second white 236.889
CRR073311Second white 342.421
CRR073312Silver flowering 135.441
CRR073313Silver flowering 236.490
CRR073314Silver flowering 331.311
CRR073315Gold flowering 121.445
CRR073316Gold flowering 234.049
CRR073317Gold flowering 330.028
CRR073318Tawny withering 137.117
CRR073319Tawny withering 231.517
CRR073320Tawny withering 335.289