Gene detail

Detail information of GWHGAAZE013886

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004238370.1	PREDICTED: receptor protein kinase CLAVATA1 [Solanum lycopersicum]
Swissprot	tr\|Q9SYQ8\|CLV1_ARATH	Receptor protein kinase CLAVATA1 (Precursor)
trEMBL	tr\|K4BVN8\|K4BVN8_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g081590.2.1}
TAIR10	AT1G75820.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2173056	2175990	+
GWHAAZE00000004	mRNA	2173056	2175990	+
GWHAAZE00000004	exon	2173056	2175546	+
GWHAAZE00000004	exon	2175632	2175990	+
GWHAAZE00000004	CDS	2173056	2175546	+
GWHAAZE00000004	CDS	2175632	2175990	+

Transcript Sequence
>GWHTAAZE013900 ATGCTTGTTGGACCTTCAAGCTCTGGCCTACAAGATTGGAAAGGCGACAACTCTTCATCTCCCTCCGCTCACTGCTCATTCACCGGAGTTACGTGTGATGAGGATTTGCGAGTAATTTCTCTCAACGTCACCAATATTCCTCTCTTTGGCACCATTCCCCCGGAGATTGGCCTTTTCAATAAGCTTGTCAATCTTACGCTCTATTGCGATAACCTCACCGGCCCACTCCCTATGGAGATGTCATCTCTGACCTCAATCAAATACATCAACCTCTCTACCAACACCTTCGTTGGCCAGTTCCCGGGGAATATCGTCATCGATATGACTGAGCTCCAAGCGTTCGACGTTTACAACAACAATTTCACCGGAAACCTTCCCATGGAGTTTGTCAAACTCAATAAACTCAAAGCTCTTAAACTTGGCGGGAACTTTTTTACCGGCGAGATTCCGGAGGCCTACTCTCAGATTCAGACGTTGGAAGTTCTGGATTTACAGGGCAATCAACTTACCGGAAAGATTCCAAGGAGCCTCGCAATGCTATCCAATCTTCAAGAGCTGAAGCTCGGCTACTTCAACTCTTACGAAGGAGGTATCCCTCCCGAATTCGGATCGTTGAGCTCGCTAAGACTCCTCGATATCGGAGGGTGTAATCTCACCGGTACCATTCCAGCGAGCCTGAGCAATTTGAAGTTGTTACACTCTTTGTTTCTTCCAGTTAATCGCCTCACTGGACACATTCCACCAGAGCTATCTAAACTTACCTGCTTGATGTCACTTGATCTCTCCATTAATGAACTCATTGGTGAGATTCCACCGAGTTTCTCTCAATTGAAGAATCTGACTCTCATAAATTTGTTTCGCAATCATCTCGCCGGTCCTATTCCTTCCTTCGTCGGTGACCTTCCTAATCTCGAGGTCTTACAAGTGTGGAATAACAATTTCACGTTTGAACTGCCGCAGAATCTTGGCAGTAACGGAAAGCTGATGCTACTCGACGTTGCTACTAATCACCTTACAGGAAGGATACCTCACGATTTGTGCAAAGGAGGGAGATTGAAGACCTTGATACTCATGGAGAATTACTTCTTCGGCCCGGTTCCTGAAGAACTGGGTGCGTGCAAGTCGTTGACTCGGATCCGAATCAGGAAGAACTTCCTTAACGGATCCATCCCCGCCGGATTCTTCAATTTGCCGGTACTTGAGATGCTGGAGCTCAACGACAATTACTTCACCGGCGAACTCCCGGCAGAGATTTCCGGTGATGCACTGGAGAGCATTATCTTATCTAACAACTGGATAACCGGCAGAATTCCTCCTGCTATAGGTAATCTAGTCAATTTAGTCGATCTATCTATTGATATAAATAGATTCTCGGGTGAAATTCCCGCGGAAATAGCAAAACTGAAGTCGCTCTTGTCAATAAACTTTAGTGCCAATAACATTACTGGAGAGATTCCCGCCTCTATTGTTCATTGTTCAAAACTGACTTTAATCGACTTGAGTCACAATGGCTTGTTGGGTGAGATACCTAGATCAATTTCAAAGTTGAACAACTTGAATGCACTCAATTTATCGAGAAATCAAATGAGCGGTGCAATACCAGCTGATTTGGGACATATGAATAGCATTACAGTATTGGATCTGTCTTACAACAACTTCTCTGGGAGGGTGCCGATGGACGGGCAACTGAGGGACGTGATGGACAAAATATTCCCCGGAAACCCTAATCTCTGTTCACCGCACCGCTCCTATTGCCCGCCAATTACAAATCCCACGCAAGTGAATCACAAAAACCATGCTGCGGTGTCATTAAGCACGTCAAAACTAGTGATCACAGTTATTGTAATCGTTACTGTGCTGTTATTACTGATGGTAACGTTTGTTAGGATCAGAAGGAAAAGGCTTCAGAAATCAAGGGCGTGGAAGCTCACGGCATTTCTAAGGCTGGATTTCAAAGCTGAGGACGTTCTTGAATGCTTGAGAGAAGAGAACATAATAGGTAAAGGCGGAGCTGGGGTTGTCTACCGCGGGTCCATGCAAAACGGTGTGGACGTGGCCATCAAGCATCTGATCGGCCGAAGCAGCGGGCACGATCATGGTTTCTCTGCAGAAATTCAGACGCTCGGAAGAATCCGGCACCGGAACATTGTCAGACTCTTGGGGTATGTGTCGAACAATGAGACGAACTTGCTCTTGTACGAGTACATGTCAAATGGTAGCTTAGGAGAAATTCTGCATGGCTCGAAAGGGGCTCACTTGCAATGGGAGACAAGGTACAGAATCGCAGTCGAGGCCGCAAAGGGACTGTGTTATCTTCACCACGATTGTTCACCTTTGATAATACATCGGGACGTGAAGTCGAATAATATCCTACTTGATTCAGATTATGAGGCGCACGTTGCAGATTTTGGTCTTGCTAAGTTTTTCCAAGACACTGGTTCTTCTGAGTGCATGTCCTCTATTGCTGGTTCCTACGGTTACATCGCACCAGAGTATGCATATACGTTGAGAGTGGACGAAAAAAGTGATGTGTACAGTTTTGGTGTGGTGTTGCTAGAGCTAATTGTGGGGCGAAAGCCGGTGGGTGAGTTTGGGGATGGTGTGGACATAGTGAGGTGGGTCCGGAAAACGATATCGGAGCTATCTCAGCCTTCGGATGCTGCTTCGGTACTTGCTGTGTTAGACTCGAGGCTAAGTGGGTACTCGCTGACTAGTGTCATCAATCTGTTCAAGATAGCAATGATGTGCGTCGAGGATGAGAGTGCTGCGAGACCTACCATGAGGGAAGTTGTTCACATGCTAACAAATCCTCCCCACCAAGCTGCAACAACTAGGCTCGTAACTCTCTGA

Network for GWHGAAZE013886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	159	177	0.26
PF00560.34	LRR_1	207	229	0.074
PF00560.34	LRR_1	494	516	0.5
PF07714.18	PK_Tyr_Ser-Thr	663	934	1.00E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.184
	SRR3591706	second leaf	8.731
	SRR3591707	mature leaf	15.456
	SRR3591708	Shoot apex	3.016
	SRR3591709	Stem	21.920
	SRR3591710	White floral bud	5.705
	SRR3591711	White flower	3.961
	SRR3591712	Green floral bud	4.348
	SRR3591713	Yellow flower	0.671
SRP173429	SRR8316895	Juvenile bud stage	1.929
	SRR8316896	Juvenile bud stage	2.201
	SRR8316897	Juvenile bud stage	1.140
	SRR8316894	Third green stage	2.130
	SRR8316900	Third green stage	6.278
	SRR8316901	Third green stage	5.636
	SRR8316898	Complete white stage	4.356
	SRR8316899	Complete white stage	17.756
	SRR8316903	Complete white stage	13.947
	SRR8316902	Silver flowering stage	6.815
	SRR8316904	Silver flowering stage	7.770
	SRR8316905	Silver flowering stage	2.212
	SRR8316906	Gold flowering stage	6.082
	SRR8316907	Gold flowering stage	7.843
	SRR8316908	Gold flowering stage	6.735
SRP132670	SRR6706286	Control	4.623
	SRR6706287	Light intensity 50%	4.621
	SRR6706288	Light intensity 20%	4.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.067
	CNS0095593	Slightly white alabastrum(diploid) 2	13.038
	CNS0095594	Slightly white alabastrum(diploid) 3	8.811
	CNS0095595	Whole white alabastrum(diploid) 2	10.973
	CNS0095596	Whole white alabastrum(diploid) 3	8.778
	CNS0095597	Whole white alabastrum(diploid) 4	11.034
	CNS0095598	Silvery flower (diploied) 1	17.666
	CNS0095599	Silvery flower (diploied) 2	15.147
	CNS0095600	Silvery flower (diploied) 3	13.271
	CNS0095601	Golden flower (diploid) 1	7.170
	CNS0095602	Golden flower (diploid) 2	6.715
	CNS0095603	Golden flower (diploid) 3	6.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.384
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.932
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.675
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.715
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.931
	CNS0095610	Silvery flower (tetraploid) 1	16.860
	CNS0095611	Silvery flower (tetraploid) 2	7.309
	CNS0095612	Silvery flower (tetraploid) 3	6.378
	CNS0095613	Golden flower (tetraploid) 1	7.862
	CNS0095614	Golden flower (tetraploid) 2	6.445
	CNS0095615	Golden flower (tetraploid) 3	5.269
CRA001975	CRR073297	Stem 1	2.092
	CRR073298	Stem 2	2.536
	CRR073299	Stem 3	2.309
	CRR073300	Leaf 1	8.336
	CRR073301	Leaf 2	9.209
	CRR073302	Leaf 3	5.029
	CRR073303	Juvenile bud 1	14.800
	CRR073304	Juvenile bud 2	6.255
	CRR073305	Juvenile bud 3	16.932
	CRR073306	Third green 1	4.369
	CRR073307	Third green 2	8.205
	CRR073308	Third green 3	5.784
	CRR073309	Second white 1	1.962
	CRR073310	Second white 2	2.538
	CRR073311	Second white 3	1.457
	CRR073312	Silver flowering 1	0.367
	CRR073313	Silver flowering 2	0.161
	CRR073314	Silver flowering 3	1.126
	CRR073315	Gold flowering 1	11.485
	CRR073316	Gold flowering 2	12.428
	CRR073317	Gold flowering 3	12.955
	CRR073318	Tawny withering 1	43.605
	CRR073319	Tawny withering 2	76.195
	CRR073320	Tawny withering 3	40.428