Detail information of GWHGAAZE013888


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002279699.10PREDICTED: uncharacterized protein LOC100247144 [Vitis vinifera]
trEMBLtr|F6H1M0|F6H1M0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46048.1}
TAIR10AT4G24200.17E-45Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene22101832212939+
GWHAAZE00000004mRNA22101832212939+
GWHAAZE00000004exon22101832212939+
GWHAAZE00000004CDS22101832212939+
Transcript Sequence

Network for GWHGAAZE013888

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.12Med261001472.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.791
SRR3591706second leaf7.915
SRR3591707mature leaf7.489
SRR3591708Shoot apex10.078
SRR3591709Stem13.729
SRR3591710White floral bud11.196
SRR3591711White flower17.064
SRR3591712Green floral bud6.881
SRR3591713Yellow flower15.976
SRP173429 SRR8316895Juvenile bud stage 5.068
SRR8316896Juvenile bud stage 6.771
SRR8316897Juvenile bud stage 3.369
SRR8316894Third green stage 3.001
SRR8316900Third green stage 6.567
SRR8316901Third green stage 6.171
SRR8316898Complete white stage 2.981
SRR8316899Complete white stage 8.534
SRR8316903Complete white stage 6.068
SRR8316902Silver flowering stage5.089
SRR8316904Silver flowering stage8.003
SRR8316905Silver flowering stage3.381
SRR8316906Gold flowering stage 13.045
SRR8316907Gold flowering stage 11.837
SRR8316908Gold flowering stage 14.095
SRP132670SRR6706286Control5.877
SRR6706287Light intensity 50%6.254
SRR6706288Light intensity 20%6.005
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.004
CNS0095593Slightly white alabastrum(diploid) 23.417
CNS0095594Slightly white alabastrum(diploid) 35.376
CNS0095595Whole white alabastrum(diploid) 24.195
CNS0095596Whole white alabastrum(diploid) 32.891
CNS0095597Whole white alabastrum(diploid) 43.927
CNS0095598Silvery flower (diploied) 19.883
CNS0095599Silvery flower (diploied) 26.434
CNS0095600Silvery flower (diploied) 311.790
CNS0095601Golden flower (diploid) 17.818
CNS0095602Golden flower (diploid) 213.792
CNS0095603Golden flower (diploid) 312.619
CNS0095604Slightly white alabastrum(tetraploid) 15.166
CNS0095605Slightly white alabastrum(tetraploid) 23.664
CNS0095606Slightly white alabastrum(tetraploid) 38.189
CNS0095607Whole white alabastrum(tetraploid) 13.747
CNS0095608Whole white alabastrum(tetraploid) 23.045
CNS0095609Whole white alabastrum(tetraploid) 36.595
CNS0095610Silvery flower (tetraploid) 113.319
CNS0095611Silvery flower (tetraploid) 210.226
CNS0095612Silvery flower (tetraploid) 319.081
CNS0095613Golden flower (tetraploid) 19.847
CNS0095614Golden flower (tetraploid) 213.579
CNS0095615Golden flower (tetraploid) 316.460
CRA001975CRR073297Stem 110.473
CRR073298Stem 210.516
CRR073299Stem 311.007
CRR073300Leaf 19.188
CRR073301Leaf 29.603
CRR073302Leaf 37.193
CRR073303Juvenile bud 16.290
CRR073304Juvenile bud 24.830
CRR073305Juvenile bud 38.857
CRR073306Third green 111.344
CRR073307Third green 27.812
CRR073308Third green 311.338
CRR073309Second white 19.564
CRR073310Second white 213.631
CRR073311Second white 314.442
CRR073312Silver flowering 112.544
CRR073313Silver flowering 210.855
CRR073314Silver flowering 39.851
CRR073315Gold flowering 110.641
CRR073316Gold flowering 211.866
CRR073317Gold flowering 39.030
CRR073318Tawny withering 112.370
CRR073319Tawny withering 211.511
CRR073320Tawny withering 311.181