Gene detail

Detail information of GWHGAAZE013900

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABX74780.1	0	flavanone-3-hydroxylase [Rubus sp. SSL-2007]
Swissprot	tr\|Q7XZQ7\|FL3H_PETCR	0	Flavanone 3-dioxygenase
trEMBL	tr\|B6RNJ4\|B6RNJ4_9ROSA	0	Flavanone-3-hydroxylase {ECO:0000313\|EMBL:ABY84868.1}
TAIR10	AT3G51240.1	6E-177	flavanone 3-hydroxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2416210	2419862	-
GWHAAZE00000004	mRNA	2416210	2419862	-
GWHAAZE00000004	exon	2416210	2416527	-
GWHAAZE00000004	exon	2417304	2417732	-
GWHAAZE00000004	exon	2419485	2419862	-
GWHAAZE00000004	CDS	2419485	2419862	-
GWHAAZE00000004	CDS	2417304	2417732	-
GWHAAZE00000004	CDS	2416210	2416527	-

Transcript Sequence
>GWHTAAZE013914 ATGGCTCCAACACCAACACCAACACCAACACCACTTAGTGCATTCGCCGACGACAAGACCCTCCAGTCAAAATTTGTTAGAGATGAAGACGAGCGCCCAAAAGTAGCCTACAACCAATTCAGCACCGACATTCCTGTCATTTCTCTTTCCGGAATCAATGATTCTGAGGACCGGAGATCGGAGATATGCCAGAAAATAGTGGAAGCATGCGAAGACTGGGGGATATTCCAGGTCATTGATCACGGAGTTGATACCTCACTCATATCCGACATGACTCGCTTCGCTCGCGATTTCTTCGCTATGTCACCTGAAGAAAAGCTTCGCTTCGACATGTCCGGAGGCAAAAAAGGCGGCTTCATTGTCTCTAGTCATCTCCAGGGGGAAGCAGTGCAGGATTGGCGTGAGATTGTGACCTACTTCTCGTATCCGATCAGGGCCCGAGACTATTCTAGATGGCCCGACAAGCCAGAGGGATGGAAGGAGGTGACGGAGGAGTACAGCGAGAAATTGATGGGGTTGGGTTGTAAGTTGTTGGAGGTGCTCTCAGAGGCTATGGGCCTTGAGAAGGAGGCTTTGACTAAGGCCTGTGTGGATATGGATCAGAAAGTGGTTGTTAATTACTATCCCAAGTGCCCACAGCCCGATCTTACTCTCGGGTTAAAGAGGCATACGGATCCTGGTACCATCACCCTGCTGCTCCAGGATAAGGTGGGCGGTTTACAGGCCACAAGGGATGGCGGGAAGACATGGATCACGGTTCAACCGGTGGAGGGTGCTTTTGTTGTCAATTTGGGTGATCATGGTCATTTTCTAAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCAGTAGTGAACTCCAACCATAGCAGGCTCTCAATTGCCACTTTCCAGAACCCGGCTCCGGATGCAATTGTGTACCCCCTCAAGATTAATGAGGGAGAAAAGTCGGTTATGGAGGAGCCCATCACTTTTGCAGAGATGTACAAGAGGAAGATGAGCAAGGATCTTGAAACCGCCAGGCTTAAGAAACTTACTAAAGAGAAAGTGTTGAACGACCAAGAGCTCGAAAAGGTCGAAGTCGTCGAAGTCAATCTCAAAAGCACTAAGGCCATTTTCGCTTAA

Network for GWHGAAZE013900

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	44	154	6.90E-22
PF03171.21	2OG-FeII_Oxy	201	299	7.30E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00475	F3H	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	157.646
	SRR3591706	second leaf	0.532
	SRR3591707	mature leaf	1.390
	SRR3591708	Shoot apex	43.453
	SRR3591709	Stem	235.246
	SRR3591710	White floral bud	40.640
	SRR3591711	White flower	34.819
	SRR3591712	Green floral bud	133.352
	SRR3591713	Yellow flower	0.980
SRP173429	SRR8316895	Juvenile bud stage	150.784
	SRR8316896	Juvenile bud stage	160.071
	SRR8316897	Juvenile bud stage	73.754
	SRR8316894	Third green stage	46.461
	SRR8316900	Third green stage	133.739
	SRR8316901	Third green stage	146.286
	SRR8316898	Complete white stage	4.514
	SRR8316899	Complete white stage	57.120
	SRR8316903	Complete white stage	19.942
	SRR8316902	Silver flowering stage	1.685
	SRR8316904	Silver flowering stage	3.769
	SRR8316905	Silver flowering stage	0.504
	SRR8316906	Gold flowering stage	0.899
	SRR8316907	Gold flowering stage	3.424
	SRR8316908	Gold flowering stage	3.037
SRP132670	SRR6706286	Control	142.410
	SRR6706287	Light intensity 50%	156.400
	SRR6706288	Light intensity 20%	169.263
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	273.768
	CNS0095593	Slightly white alabastrum(diploid) 2	157.457
	CNS0095594	Slightly white alabastrum(diploid) 3	415.843
	CNS0095595	Whole white alabastrum(diploid) 2	155.898
	CNS0095596	Whole white alabastrum(diploid) 3	129.834
	CNS0095597	Whole white alabastrum(diploid) 4	145.694
	CNS0095598	Silvery flower (diploied) 1	82.453
	CNS0095599	Silvery flower (diploied) 2	76.397
	CNS0095600	Silvery flower (diploied) 3	35.126
	CNS0095601	Golden flower (diploid) 1	132.147
	CNS0095602	Golden flower (diploid) 2	50.221
	CNS0095603	Golden flower (diploid) 3	44.932
	CNS0095604	Slightly white alabastrum(tetraploid) 1	156.104
	CNS0095605	Slightly white alabastrum(tetraploid) 2	173.056
	CNS0095606	Slightly white alabastrum(tetraploid) 3	210.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	79.064
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.721
	CNS0095609	Whole white alabastrum(tetraploid) 3	123.281
	CNS0095610	Silvery flower (tetraploid) 1	12.691
	CNS0095611	Silvery flower (tetraploid) 2	18.815
	CNS0095612	Silvery flower (tetraploid) 3	15.932
	CNS0095613	Golden flower (tetraploid) 1	0.777
	CNS0095614	Golden flower (tetraploid) 2	3.828
	CNS0095615	Golden flower (tetraploid) 3	1.557
CRA001975	CRR073297	Stem 1	324.632
	CRR073298	Stem 2	318.244
	CRR073299	Stem 3	379.922
	CRR073300	Leaf 1	262.294
	CRR073301	Leaf 2	245.953
	CRR073302	Leaf 3	389.263
	CRR073303	Juvenile bud 1	269.354
	CRR073304	Juvenile bud 2	134.498
	CRR073305	Juvenile bud 3	223.367
	CRR073306	Third green 1	9.424
	CRR073307	Third green 2	17.905
	CRR073308	Third green 3	14.892
	CRR073309	Second white 1	3.660
	CRR073310	Second white 2	3.082
	CRR073311	Second white 3	1.391
	CRR073312	Silver flowering 1	0.763
	CRR073313	Silver flowering 2	0.664
	CRR073314	Silver flowering 3	0.159
	CRR073315	Gold flowering 1	21.947
	CRR073316	Gold flowering 2	13.157
	CRR073317	Gold flowering 3	9.697
	CRR073318	Tawny withering 1	46.119
	CRR073319	Tawny withering 2	39.717
	CRR073320	Tawny withering 3	39.634