Gene detail

Detail information of GWHGAAZE013913

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009761615.1	PREDICTED: ATP sulfurylase 2 [Nicotiana sylvestris]
Swissprot	tr\|Q43870\|APS2_ARATH	ATP sulfurylase 2 (Precursor)
trEMBL	tr\|A0A061FDK4\|A0A061FDK4_THECC	Pseudouridine synthase/archaeosine transglycosylase-like family protein isoform 1 {ECO:0000313\|EMBL:EOY14993.1}
TAIR10	AT1G19920.1	Pseudouridine synthase/archaeosine transglycosylase-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2670924	2674816	+
GWHAAZE00000004	mRNA	2670924	2674816	+
GWHAAZE00000004	exon	2670924	2671324	+
GWHAAZE00000004	exon	2671956	2672361	+
GWHAAZE00000004	exon	2672532	2672792	+
GWHAAZE00000004	exon	2673804	2673890	+
GWHAAZE00000004	exon	2674682	2674816	+
GWHAAZE00000004	CDS	2670924	2671324	+
GWHAAZE00000004	CDS	2671956	2672361	+
GWHAAZE00000004	CDS	2672532	2672792	+
GWHAAZE00000004	CDS	2673804	2673890	+
GWHAAZE00000004	CDS	2674682	2674816	+

Transcript Sequence
>GWHTAAZE013927 ATGACCACTCTACCTTCTAAAACAGACTCATTGGTGATCAAGAGCTCTCTCATCGACCCAGATGGCGGGTCTTTGATCGATCTAGTTGTGCCAGATACCCAGAGGGATTTGAAGGTTTCTGAGGCTGAAAAATTGCCCAAGGTAAAGCTGACCCAGATTGATCTCCAATGGGTTCATGTGATCAGTGAGGGTTGGGCTAGTCCATTGAAGGGTTTTATGAGAGAAGACGAGTATTTACAGTCTCTGCATTTCAATTCTTTGAGAACCAAAGATGGGTCTCTGGTGAATATGTCGCTTCCCATTGTTTTGGCAATTGATGACGAGGCTAAAGAAAGGATTGGTGGGTCTTCTGATGTCACATTGGTTGGTCCTGGTGGTGATTCAGTTGCTATTCTTAGGAGCGCTGAAATATACAAGCATAACAAAGAAGAGAGAATTGCAAGGACTTGGGGAACCACTGCTCCTGGATTACCTTATGTGGAGGAGGTAATCACTCCTGCTGGAAATTGGCTCATTGGTGGAGATCTTGAAGTGTTAAAGCATATCAAATATAACGACGGTCTTGATCAATACAGGCTCTCTCCCAAAGAACTCCGGAATGAATTTGATCGTCGTCAGGCTGATGCAGTTTTTGCTTTTCAGCTAAGGAATCCTGTACATAATGGTCACGCTTTGTTAATGAATGATACACGCAGGAGGCTTTTAGAAATGGGTTTTAAGAATCCAATCCTTTTGCTTCATCCGTTAGGGGGTTTTGTAAAGGCTGATGATGTGCCGTTGGATGTTCGTATGGAACAACATAGCAAGGTCCTATCGGATGGAGTCCTTGACCCTGAGACAACTGTTGTGGCCATATTCCCATCTCCAATGCATTACGCAGGTCCAACTGAAGTTCAGTGGCATGCCAAGGCACGGATAAATGCAGGTGCTAATTTCTACATTGTGGGTCGTGATCCTGCTGGTATGGGTCACCCAACAGAAAAGAGGGATTTATATGATCCAAATCATGGAAAAAAGGTGCTAAGTATGGCTCCTGGCCTGGAGAAGTTGAATATATTGCCATTCAGGGTGGCAGCATATGATACAGTAGAAAAGAAGATGGCATTTTTTGACCCTTCCCGCTCTTCGGAGTTTCTCTTCATCTCTGGCACCAAGATGAGGGCTTATGCAAGAAATGGAGAGAATCCTCCAGATGGTTTCATGTGTCCTGGTGGGTGGGAAGTTTTGGTCAAATATTATGCAAGCTTGCAAGCTGAAGACGCTTCCGAGAAAACTCTGCAGTCTGCTTAG

Network for GWHGAAZE013913

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14306.7	PUA_2	18	180	8.30E-47
PF01747.18	ATP-sulfurylase	189	412	1.20E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13811	PAPSS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920
		Purine metabolism	map00230
		Selenocompound metabolism	map00450
		Monobactam biosynthesis	map00261

Gene Ontology

GO term	Ontology	Name
GO:0000103	biological_process	sulfate assimilation
GO:0004781	molecular_function	sulfate adenylyltransferase (ATP) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.697
	SRR3591706	second leaf	176.786
	SRR3591707	mature leaf	117.866
	SRR3591708	Shoot apex	67.773
	SRR3591709	Stem	35.597
	SRR3591710	White floral bud	27.225
	SRR3591711	White flower	31.577
	SRR3591712	Green floral bud	56.663
	SRR3591713	Yellow flower	20.582
SRP173429	SRR8316895	Juvenile bud stage	33.692
	SRR8316896	Juvenile bud stage	51.616
	SRR8316897	Juvenile bud stage	28.322
	SRR8316894	Third green stage	25.291
	SRR8316900	Third green stage	70.168
	SRR8316901	Third green stage	69.408
	SRR8316898	Complete white stage	15.927
	SRR8316899	Complete white stage	55.758
	SRR8316903	Complete white stage	26.107
	SRR8316902	Silver flowering stage	10.045
	SRR8316904	Silver flowering stage	18.471
	SRR8316905	Silver flowering stage	7.911
	SRR8316906	Gold flowering stage	22.358
	SRR8316907	Gold flowering stage	16.571
	SRR8316908	Gold flowering stage	39.735
SRP132670	SRR6706286	Control	39.755
	SRR6706287	Light intensity 50%	45.582
	SRR6706288	Light intensity 20%	51.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.527
	CNS0095593	Slightly white alabastrum(diploid) 2	35.155
	CNS0095594	Slightly white alabastrum(diploid) 3	36.760
	CNS0095595	Whole white alabastrum(diploid) 2	32.353
	CNS0095596	Whole white alabastrum(diploid) 3	34.269
	CNS0095597	Whole white alabastrum(diploid) 4	28.207
	CNS0095598	Silvery flower (diploied) 1	23.046
	CNS0095599	Silvery flower (diploied) 2	24.520
	CNS0095600	Silvery flower (diploied) 3	25.906
	CNS0095601	Golden flower (diploid) 1	18.465
	CNS0095602	Golden flower (diploid) 2	19.816
	CNS0095603	Golden flower (diploid) 3	20.512
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.171
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.573
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.380
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.292
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.674
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.880
	CNS0095610	Silvery flower (tetraploid) 1	50.142
	CNS0095611	Silvery flower (tetraploid) 2	54.339
	CNS0095612	Silvery flower (tetraploid) 3	21.598
	CNS0095613	Golden flower (tetraploid) 1	21.666
	CNS0095614	Golden flower (tetraploid) 2	37.020
	CNS0095615	Golden flower (tetraploid) 3	17.203
CRA001975	CRR073297	Stem 1	31.187
	CRR073298	Stem 2	31.295
	CRR073299	Stem 3	33.463
	CRR073300	Leaf 1	41.470
	CRR073301	Leaf 2	32.106
	CRR073302	Leaf 3	38.200
	CRR073303	Juvenile bud 1	45.529
	CRR073304	Juvenile bud 2	34.580
	CRR073305	Juvenile bud 3	48.200
	CRR073306	Third green 1	26.486
	CRR073307	Third green 2	15.017
	CRR073308	Third green 3	21.660
	CRR073309	Second white 1	9.675
	CRR073310	Second white 2	11.098
	CRR073311	Second white 3	6.855
	CRR073312	Silver flowering 1	6.022
	CRR073313	Silver flowering 2	5.921
	CRR073314	Silver flowering 3	5.140
	CRR073315	Gold flowering 1	29.747
	CRR073316	Gold flowering 2	32.614
	CRR073317	Gold flowering 3	30.580
	CRR073318	Tawny withering 1	26.877
	CRR073319	Tawny withering 2	25.605
	CRR073320	Tawny withering 3	22.500