Gene detail

Detail information of GWHGAAZE013917

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP07420.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|P93024\|ARFE_ARATH	Auxin response factor 5
trEMBL	tr\|A0A068UFS9\|A0A068UFS9_COFCA	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G19850.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2803743	2809042	+
GWHAAZE00000004	mRNA	2803743	2809042	+
GWHAAZE00000004	exon	2803743	2804127	+
GWHAAZE00000004	exon	2804268	2804380	+
GWHAAZE00000004	exon	2805131	2805229	+
GWHAAZE00000004	exon	2805332	2805388	+
GWHAAZE00000004	exon	2805524	2805676	+
GWHAAZE00000004	exon	2805794	2805878	+
GWHAAZE00000004	exon	2806008	2806098	+
GWHAAZE00000004	exon	2806199	2806363	+
GWHAAZE00000004	exon	2806460	2806582	+
GWHAAZE00000004	exon	2806687	2806762	+
GWHAAZE00000004	exon	2806862	2806997	+
GWHAAZE00000004	exon	2807086	2808338	+
GWHAAZE00000004	exon	2808435	2808625	+
GWHAAZE00000004	exon	2808880	2809042	+
GWHAAZE00000004	five_prime_UTR	2803743	2804024	+
GWHAAZE00000004	CDS	2804025	2804127	+
GWHAAZE00000004	CDS	2804268	2804380	+
GWHAAZE00000004	CDS	2805131	2805229	+
GWHAAZE00000004	CDS	2805332	2805388	+
GWHAAZE00000004	CDS	2805524	2805676	+
GWHAAZE00000004	CDS	2805794	2805878	+
GWHAAZE00000004	CDS	2806008	2806098	+
GWHAAZE00000004	CDS	2806199	2806363	+
GWHAAZE00000004	CDS	2806460	2806582	+
GWHAAZE00000004	CDS	2806687	2806762	+
GWHAAZE00000004	CDS	2806862	2806997	+
GWHAAZE00000004	CDS	2807086	2808338	+
GWHAAZE00000004	CDS	2808435	2808625	+
GWHAAZE00000004	CDS	2808880	2809042	+

Transcript Sequence
>GWHTAAZE013931 TTCTTTCTCTTTCTCTCTCTCTTTTTTCACCATCAAATATGTGTCATTCCCTTGGGTGCTTAATCCCCGTTTCATTTGAAGACTTTTGGGGATGAGGGGTCATTGGTTGTGTCTTTTCCTCTTGTAATAAAAGTGGGTCTTTGAATTTTGTGGGTTTTGGTTGCAAAGATCCAATCATTTTGGGATGCTGATTGGTAACGCTTGAAAAAGAATAATTTCCAATTGGATTTTATTCTTTTTTTGTGGGTGTGAAGATTTGGTTGATTGAATCTTGATTCAAAGATGACTTCTGTTGAAGAGAAGCTGAAACCAGCAGGATTCATCAATGGGGCGCATACTCTTCTTGAAGAGATGAAATTGTTGAAAGAAATGCAGGATCATTCGGGTGTGGGGAAGGCAATAAATTCGGAGCTATGGCACGCATGTGCAGGGCCACTGGTGACCCTGCCTCAGGTTGGAAGCCTGGTCTATTACTTCCCACAAGGGCACAGCGAACAGGTGGCTGTTTCCACAAACAGAACAGCAACTTCACAGATCCCTAACTACCCGAATCTCCCGTCTCAGTTGTTGTGCCAAGTTCATAATGTTACACTCCATGCTGACAAAGATACAGACGAGATCTATGCCCAAATGAGCCTTCAACCAGTGAACTCTGAAAAAGATGTCTTCCCTATACCAGACTTTGGACTCAAGCCCAGTAAGCATCCAACTGAATTCTTCTGCAAAACATTGACTGCAAGTGACACGAGCACACATGGTGGCTTCTCAGTGCCTCGTAGGGCAGCCGAAAAGCTCTTTCCACAATTGGATTTTTCAATGCAACCTCCAACTCAAGAACTTGTAGTCCGGGACTTGCATGATAATACCTGGACATTTCGTCATATATACCGCGGGCAACCAAAACGACATCTTCTCACAACAGGTTGGAGTATGTTTGTTGGTGCAAAAAGGCTTAGAGCAGGTGATGCTGTTCTATTTATCAGGGATGAGAAATCGCAATTATTGTTGGGAGTTAGGCGTGCAAATCGTCAGCAAACGGCTTTGCCATCGTCAGTTCTTTCTGCTGATAGTATGCACATTGGAGTCCTTGCTGCTGCAGCTCATGCTGCTGCTAACCGTAGCCCGTTCACAATTTTCTATAATCCAAGGGCGTGCCCTTCAGAATTTGTCATCCCGTTGGCAAAATATCGAAAAGCAGTATATGGCACCCAACTTTCAGCTGGTATGAGGTTTGGTATGATGTTTGAAACAGAGGAGTCGGGTAAACGCAGATATATGGGCACAATTGTCGGTATCAGCGACTTGGATCCGCTAAGGTGGCCTGGTTCCAAGTGGCGTAACCTTCAGGTGGAATGGGACGAGCCTGCGTGTGGGGATAAGCAGAATCGAGTTAATCCATGGGAAATTGAGACTCCTGAAAGTCTCTTCATTTTTCCTTCTCTCACTTCTAGTCTCAAACGGCCTTTCCAATCTGCTTTTTTCGGAGCACAAACAGAGTGGGAAAATTTGATAAACAGACCTTTCATCCGTGTCCCTGAAAATCTAAATGCGGACCTTTCTAATCTTCCCAATCCATCTATGTCTAGCCTATGGTCAGAACAATTGGTCAAAATGTTGATGAAACCTCAAAGTGTTAACCATCATGAAGCCGTGGCACCTGCTATACTAGACTCGACCACAACCGAACCAACATCCCAAGCGGCTAAGGCTCAGACACAAGCAACTGCCAAGATGAATCCTCAACCTATACGATCCGAACACACAGTCCCACAAAATGAAAATCATCCTCGATTCCACTTGGCCCAAGCCAATACCGTAGAGCCAAACTTTTTGTCACAAACAAATCTATCCATAAAACCACAACCTCTAATCAAACACGTAAACCAGGCACCGGCCAGAACCCAAACTGAGGTTACAAAATCTGAACCAGACCAGCTAATCCAGTATACATCTGCTATGAATCAACACAATCTAGTTAATGATACGGCATTCCTTAACCAGAACAATGTTTCGTCGCAATTACAGTCGAGCCCATGGCTCACACAGCCACATTTGGATTCGAACATCCTCCACACTCAACAAATCGATGCACCACAACTAGACTCTTCTACTTTGAGCGGCTTACTTCCTTACCCCGATAATAACGAGTGGAATTCACATTATTCAAGCCAGTTTCTTAGGTCGCCAGGTTCTTCATCTGCCTTCAAAAAGCAAGAACCTGCTGTTAATCCTACTTCAATGGGCCATGAAATGCGGGGTCATCAAATGAATAATTCGAGGTTCTTGTCACAACCAAATCAACTTGCTCCATTGCCTCAGCCCGACCAAAATAGCCTTCAGTATGTATCTAATCAATACGGGTTGAAGGATTTGTCAGACGAGAGTCATAACCAACAAACCGATATTTATAGCTGTCTTAATTTTGATGGTAGTAATGGTGGTAGCACTTTGGTTGATGCTTCTGTCTCGAGCACGGTATTGGACGAGTTTTGCACATTTAAAGATGGCGACTTCCAAAATCCTTCGGATTATCTTGTGGGGAATTTCAGTTCAAGCCAAGATGTACAGTCGCAGATTACATCAGCGAGCTTAGCTGAGTCTCAGGCTTTCTCTCTCCAAGACTTTCCGGATATTTCTGGCGGCACTTCTTCAAGTAATGCAGAATTTGACGATAATGGTCTTTTGCAGAACAATGCTTGGCAACAAGTAGCTCCCAGGGTGCGAACTTATACAAAGATTCAGAAGGCGGGATCTGTTGGGAGGTCAATTGATGTCTCGAGTTTTACGAATTACGATGAACTACTTTCCGAAATTGAACGCATGTTTGGACTCGAGGGACTTCTTAACAACTCAAGAGGATCCGGGTGGAAACTGGTGTATGTTGATTTCGAGAATGATGTTCTCCTTGTCGGAGATGATCCGTGGGAGGAATTTGTGGGGTGTGTACGCTGCATCAGAATATTATCACCGTCTGAAGTTCAGCAGATGGGTGAAGAGGGAATGCAGCTGCTCAACAGCACAGCGATGCAGCAGCAGGGGATCAACGGTTCAGGATCAGACTGTGGTCTTGTTTGGGATGGCCCCCACTGA

Network for GWHGAAZE013917

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	146	247	5.40E-21
PF06507.14	Auxin_resp	272	355	3.90E-33
PF02309.17	AUX_IAA	805	901	1.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.066
	SRR3591706	second leaf	5.800
	SRR3591707	mature leaf	1.199
	SRR3591708	Shoot apex	36.939
	SRR3591709	Stem	7.752
	SRR3591710	White floral bud	5.008
	SRR3591711	White flower	7.103
	SRR3591712	Green floral bud	5.236
	SRR3591713	Yellow flower	2.878
SRP173429	SRR8316895	Juvenile bud stage	9.604
	SRR8316896	Juvenile bud stage	11.767
	SRR8316897	Juvenile bud stage	2.937
	SRR8316894	Third green stage	3.704
	SRR8316900	Third green stage	4.347
	SRR8316901	Third green stage	3.773
	SRR8316898	Complete white stage	0.042
	SRR8316899	Complete white stage	2.582
	SRR8316903	Complete white stage	0.556
	SRR8316902	Silver flowering stage	0.260
	SRR8316904	Silver flowering stage	0.139
	SRR8316905	Silver flowering stage	0.014
	SRR8316906	Gold flowering stage	0.225
	SRR8316907	Gold flowering stage	0.663
	SRR8316908	Gold flowering stage	0.305
SRP132670	SRR6706286	Control	7.077
	SRR6706287	Light intensity 50%	6.380
	SRR6706288	Light intensity 20%	6.354
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.768
	CNS0095593	Slightly white alabastrum(diploid) 2	2.057
	CNS0095594	Slightly white alabastrum(diploid) 3	4.640
	CNS0095595	Whole white alabastrum(diploid) 2	1.416
	CNS0095596	Whole white alabastrum(diploid) 3	0.556
	CNS0095597	Whole white alabastrum(diploid) 4	0.786
	CNS0095598	Silvery flower (diploied) 1	3.614
	CNS0095599	Silvery flower (diploied) 2	2.408
	CNS0095600	Silvery flower (diploied) 3	2.078
	CNS0095601	Golden flower (diploid) 1	2.921
	CNS0095602	Golden flower (diploid) 2	3.822
	CNS0095603	Golden flower (diploid) 3	3.404
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.284
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.293
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.662
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.285
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.404
	CNS0095610	Silvery flower (tetraploid) 1	0.764
	CNS0095611	Silvery flower (tetraploid) 2	1.600
	CNS0095612	Silvery flower (tetraploid) 3	0.842
	CNS0095613	Golden flower (tetraploid) 1	0.594
	CNS0095614	Golden flower (tetraploid) 2	1.167
	CNS0095615	Golden flower (tetraploid) 3	0.514
CRA001975	CRR073297	Stem 1	23.435
	CRR073298	Stem 2	21.377
	CRR073299	Stem 3	28.357
	CRR073300	Leaf 1	9.059
	CRR073301	Leaf 2	6.395
	CRR073302	Leaf 3	7.931
	CRR073303	Juvenile bud 1	5.642
	CRR073304	Juvenile bud 2	3.611
	CRR073305	Juvenile bud 3	9.221
	CRR073306	Third green 1	0.064
	CRR073307	Third green 2	0.161
	CRR073308	Third green 3	0.313
	CRR073309	Second white 1	0.755
	CRR073310	Second white 2	0.484
	CRR073311	Second white 3	0.949
	CRR073312	Silver flowering 1	0.947
	CRR073313	Silver flowering 2	1.933
	CRR073314	Silver flowering 3	1.614
	CRR073315	Gold flowering 1	2.226
	CRR073316	Gold flowering 2	3.515
	CRR073317	Gold flowering 3	3.771
	CRR073318	Tawny withering 1	15.969
	CRR073319	Tawny withering 2	7.543
	CRR073320	Tawny withering 3	17.932