Gene detail

Detail information of GWHGAAZE013929

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP07449.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q94A40\|COPA1_ARATH	Coatomer subunit alpha-1
trEMBL	tr\|A0A068UGV7\|A0A068UGV7_COFCA	Coatomer subunit alpha {ECO:0000256\|PIRNR:PIRNR003354}
TAIR10	AT1G62020.1	Coatomer, alpha subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3027833	3035407	+
GWHAAZE00000004	mRNA	3027833	3035407	+
GWHAAZE00000004	exon	3027833	3028040	+
GWHAAZE00000004	exon	3030311	3030828	+
GWHAAZE00000004	exon	3031182	3031204	+
GWHAAZE00000004	exon	3031934	3034895	+
GWHAAZE00000004	exon	3035170	3035407	+
GWHAAZE00000004	CDS	3027833	3028040	+
GWHAAZE00000004	CDS	3030311	3030828	+
GWHAAZE00000004	CDS	3031182	3031204	+
GWHAAZE00000004	CDS	3031934	3034895	+
GWHAAZE00000004	CDS	3035170	3035238	+
GWHAAZE00000004	three_prime_UTR	3035239	3035407	+

Transcript Sequence
>GWHTAAZE013943 ATGTTGACGAAGTTCGAGACCAAGAGTAACAGAGTGAAGGGGCTGAGTTTCCACAGCAAGAGGCCATGGATCTTAGCGAGTCTCCACAGTGGTGTGATCCAGCTATGGGACTACAGGATGGGGACTCTTATCGATCGATTTGACGAGCACGATGGTCCTGTTCGCGGTGTACATTTCCACAATTCTCAACCCCTGTTCGTCTCTGGAGGAGATGATTACAAAATCAAGGTGTGGAATTACAAGTTGCATAGGTGTTTGTTTACCCTTCTTGGGCATCTTGATTACATCCGTACAGTCCAATTTCACCATGAATACCCATGGATTGTTAGTGCAAGTGATGATCAGACTATTAGGATATGGAATTGGCAGTCTCGTACTTGTATTTCTGTACTGACGGGGCACAATCATTATGTGATGTGTGCTTTGTTCCACCCAAAAGAGGACCTTGTTGTATCAGCTTCGTTAGACCAGACTGTCAGGGTTTGGGATATTGGTGCCTTGAGGAAGAAGACGGTTTCCCCGGCTGATGATATCCTTCGGTTGAGTCAGATGAACACTGATTTCTTTGGTGGGGTTGATGCTGTTGTCAAGTATGTCTTGGAGGGCCACGATCGAGGAGTCAACTGGGCTTCATTCCATCCCACTCTTCCTCTGGTTGTTTCTGGAGCAGATGATCGCCAAGTGAAAATCTGGCGAATGAATGGTATGGCAGCCTGTCAATGCCTTACTCTCAGGTCAAAGTTCAATAGAAATTTCATTTTTTATTTTCCAGATACAAAGGCTTGGGAAGTAGACACTTTGAGAGGGCACATGAACAACGTGTCATGTGTACTGTTCCATGCGAGGCAGGAAATTATCGTGTCAAATTCAGAAGACAAAAGTATACGCGTGTGGGACGCTACAAAGAGGACTGGCCTCCAAACATTCCGCAGGGAGCATGACAGGTTCTGGATTCTTGTTTGTCATCCCGAGATGAACCTTCTGGCAGCTGGCCATGATAGCGGCATGATAGTTTTCAAGTTAGAGAGAGAAAGGCCGGCCTTTTCAGTCAGTGGCGATGTTGTCTACTATGTGAAAGACCGTTTTCTCCGCTTCTACGAGTATTCAACTCAGAAGGACACTCAGGTATTACCCATCCGCCGCCCCGGTTCTACCAGCTTGAATCAAGGCCCTAGAACTCTCTCTTATAGCCCTACCGAAAATGCCGTTTTAATTTGTTCAGAGACAGACGGTGGATCATATGAACTCTATATTATACCTAAAGACAGCTTTGCTAGAGGTGAGACGGTTCAAGAGGCAAAAAGAGGTATTGGGGGATCAGCGGTTTTTGTGGCTCGAAATAGGTTTGCTGTGCTTGAGAAGAGCAGTAACCAAGTTTCAGTCAAGAACCTTAAAAACGAGGTTGTCAAGAAGAGCCCCCTTCCTGTTTCTACTGATGCGATATTCTATGCTGGCACTGGAAACCTGCTATGCAGGGCAGAGGACAGGGTTGTCATTTTCGACCTCCAACAGAGGATGGTCCTTGGCGATCTTCAGACTTCTTTTGTTAGGTATGTCGTTTGGTCAAGTGACATGGAGAGTGTTGCTTTGTTGAGCAAACATTCGATAATCATAGCCGATAAGAAGCTTTCTCATCGCTGCACTCTTCACGAGACAATTCGGGTCAAGAGTGGAGCATGGGATGACAACGGTGTCTTTATATATACAACACTAACCCACATTAAATACTGCCTTCCAAATGGGGACTCTGGAATCATAAGGACCCTTGACGTCCCAGTATACATCACAAAAATATTTGGAAGCACAATCTTTTGCTTGGACCGCGATGGGAAAAACCGTCCCATTATTATCGATTCAACTGAATATGTTTTCAAGCTGTCCCTGCTGAGGAAGAGATACGACCATGTTATGAGCATGATTAGGAACTCAGAGCTCTGCGGACAAGCCATGATCGCATATCTCCAGCAAAAAGGTTTCCCAGAAGTTGCTCTCCATTTTGTGAAGGATGAGCGAACTCGTTTTAACTTGGCCCTCGAAAGTGGTAATATCCAGATAGCTGTTGCTTCTGCTAAAGAGATTGATGAGAAAGATTACTGGTACCGGTTGGGGGTGGAAGCCCTTCGTCAGGGTAATGCAGGTATCGTAGAATATGCATACCAGAGGACAAAGAACTTCGAGCGGCTATCTTTCCTTTATCTGATAACGGGAAATTCAGATAAACTATCCAAAATGATGAAAATTGCTGAGGTTAAGAATGATGTTATGGGTCAGTTCCACAATGCATTGTACCTGGGTGATATACAGGAGCGTGTTAAGATTCTGGAGAATGCTGGACATTTACCACTTGCATACATCACAGCTAAGGTCCATGGACTCCACGATGTTGCTGAGCGGCTTGCCGCTGAACTGGGAGACAATGTTCCTTCTTTGCCCGAGGGGAGGTCCGCTTCTCTTTTGATACCCCCAAGGCCCATGTTGTGTGGTGGAGATTGGCCTCTATTGACGGTAACGAAAGGGATCTTTGAGGGTGGTCTTGATAATGTAGGCAGGGGTGCACATGATGAGTTTGAAGATGCAGCAGATGCTGACTGGGGCGAGGAGTTGGAAATTGGGGAAGTGGAAAACATGCAGAACGGAGATATAAGTATGGTGCTGGAGGATGAAGACGTGCAAGAAGAAAATGGCGAGGGTGGATGGGATCTCGAGGATCTCGAGCTTCCTCCTGATATGGAGACGCCAAAGACTGCTACTGCACGTTCTTCGGTATTTATTGCCCCGACTACGGGTATGCCTGTGAGCCAGATTTGGGTCCAAAAGTCATCTCTTGCTGCTGAACATGTGGTGGCTGGCAATTTTGACACCGCAATGCGTTTGCTTAGCCGGCAACTGGGAATAAAGAATTTTTCTCCCTTGAAACAGTTGTTCATTGATCTTCACATGGGAAGCCATACTTACATGCTCGCCTTTTCCTCGGCACCGGTGATCTTATATGCTGTTGAAAGAGGATGGAGTGAGTCAGCAAGCCCGAACGTGAGGGGCCCACCTGCGCTAGTGTTCAATTTCTCTCAACTGGAAGAGAAGCTCAAGGCCGGTTACAAAGCCACAACTGCCGGGAAATTTTCCGAAGCTTTGCGACTTTTCCAAGGTATTCTTCACACTATACCCCTGATTGTGGTGGAGTCAAGGAGAGAGGTGGATGAAGTGAAGGAATTAATTGGCATTGTAAAGGAGTATGTTCTGGGATTACAAATGGAGGTTAAGAGGAGGGAACTAAAGGACGATCCTGTTCGTCAACAAGAGCTTGCAGCTTACTTTACCCACTGTACCCTTCAGATGCCTCACTTGAGACTCGCTTTATTAAATGCGATGACCGTTTGCTACAAGGCTGGTAATCTGAACACTGCGGGGAACTTTGCTAGGAGGCTCTTGGAGGGCAATCCAACAGCTGAAAATCAAGCCAGAACAGCACGCCAAGTGCTGCAGGCTGCGGAGAGGAACATGAGGGATAAAACCCAGCTGAACTATGATTTTAGAAACCCGTTTGTGGTTTGTGGGGCCACGTACGTGCCTATCTACCGGGGACAAAAGGATGTATTGTGCCCTTACTGCAGTTCACATTTTGTTCTCTCCCAGGAAGGTCAGATCTGTACTGTTTGTGATCTTGCGGTGATTGGATCAGATGCATCGGGTTTACTCTGCTCTCCTTCCCAGGTTGAGGCAGCTGAGTTTGCTACGTTTTCTGAGTTTGTTGGCTCTGCAGGTTCAATTTTGGTGGTATAGAAATTTTGCCACCGCAATGTCTTGCTTTGTTTTGCTTTGCTTTGACAAAGTGGAAATTGTCAGCTTGTTAAGTTATAGCAATAAATCTTTTGGTGTATTGCTACTTAGCAGTTTATGGATCTTATTAATGTCCGTGAGTTATAAGTGATAAATTAAACTATCTAACGGG

Network for GWHGAAZE013929

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	45	79	8.30E-05
PF00400.33	WD40	84	121	5.10E-08
PF00400.33	WD40	126	163	7.00E-07
PF00400.33	WD40	198	231	0.00039
PF00400.33	WD40	264	299	6.20E-05
PF04053.15	Coatomer_WDAD	365	791	2.10E-132
PF06957.12	COPI_C	838	1238	8.90E-169

Protein Sequence

>GWHPAAZE013936
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLVVSGADDRQVKIWRMNGMAACQCLTLRSKFNRNFIFYFPDTKAWEVDTLRGHMNNVSCVLFHARQEIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILVCHPEMNLLAAGHDSGMIVFKLERERPAFSVSGDVVYYVKDRFLRFYEYSTQKDTQVLPIRRPGSTSLNQGPRTLSYSPTENAVLICSETDGGSYELYIIPKDSFARGETVQEAKRGIGGSAVFVARNRFAVLEKSSNQVSVKNLKNEVVKKSPLPVSTDAIFYAGTGNLLCRAEDRVVIFDLQQRMVLGDLQTSFVRYVVWSSDMESVALLSKHSIIIADKKLSHRCTLHETIRVKSGAWDDNGVFIYTTLTHIKYCLPNGDSGIIRTLDVPVYITKIFGSTIFCLDRDGKNRPIIIDSTEYVFKLSLLRKRYDHVMSMIRNSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDYWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNSDKLSKMMKIAEVKNDVMGQFHNALYLGDIQERVKILENAGHLPLAYITAKVHGLHDVAERLAAELGDNVPSLPEGRSASLLIPPRPMLCGGDWPLLTVTKGIFEGGLDNVGRGAHDEFEDAADADWGEELEIGEVENMQNGDISMVLEDEDVQEENGEGGWDLEDLELPPDMETPKTATARSSVFIAPTTGMPVSQIWVQKSSLAAEHVVAGNFDTAMRLLSRQLGIKNFSPLKQLFIDLHMGSHTYMLAFSSAPVILYAVERGWSESASPNVRGPPALVFNFSQLEEKLKAGYKATTAGKFSEALRLFQGILHTIPLIVVESRREVDEVKELIGIVKEYVLGLQMEVKRRELKDDPVRQQELAAYFTHCTLQMPHLRLALLNAMTVCYKAGNLNTAGNFARRLLEGNPTAENQARTARQVLQAAERNMRDKTQLNYDFRNPFVVCGATYVPIYRGQKDVLCPYCSSHFVLSQEGQICTVCDLAVIGSDASGLLCSPSQVEAAEFATFSEFVGSAGSILVV

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030126	cellular_component	COPI vesicle coat
GO:0030117	cellular_component	membrane coat
GO:0005198	molecular_function	structural molecule activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	92.400
	SRR3591706	second leaf	47.957
	SRR3591707	mature leaf	31.202
	SRR3591708	Shoot apex	47.758
	SRR3591709	Stem	55.117
	SRR3591710	White floral bud	53.063
	SRR3591711	White flower	56.291
	SRR3591712	Green floral bud	80.929
	SRR3591713	Yellow flower	44.802
SRP173429	SRR8316895	Juvenile bud stage	43.486
	SRR8316896	Juvenile bud stage	62.200
	SRR8316897	Juvenile bud stage	27.797
	SRR8316894	Third green stage	26.532
	SRR8316900	Third green stage	83.841
	SRR8316901	Third green stage	79.391
	SRR8316898	Complete white stage	22.207
	SRR8316899	Complete white stage	70.271
	SRR8316903	Complete white stage	45.540
	SRR8316902	Silver flowering stage	21.167
	SRR8316904	Silver flowering stage	30.201
	SRR8316905	Silver flowering stage	15.571
	SRR8316906	Gold flowering stage	50.422
	SRR8316907	Gold flowering stage	52.265
	SRR8316908	Gold flowering stage	55.891
SRP132670	SRR6706286	Control	79.775
	SRR6706287	Light intensity 50%	83.144
	SRR6706288	Light intensity 20%	88.560
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.403
	CNS0095593	Slightly white alabastrum(diploid) 2	42.668
	CNS0095594	Slightly white alabastrum(diploid) 3	36.942
	CNS0095595	Whole white alabastrum(diploid) 2	41.093
	CNS0095596	Whole white alabastrum(diploid) 3	46.160
	CNS0095597	Whole white alabastrum(diploid) 4	39.929
	CNS0095598	Silvery flower (diploied) 1	35.852
	CNS0095599	Silvery flower (diploied) 2	29.700
	CNS0095600	Silvery flower (diploied) 3	69.525
	CNS0095601	Golden flower (diploid) 1	27.958
	CNS0095602	Golden flower (diploid) 2	65.497
	CNS0095603	Golden flower (diploid) 3	63.087
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.680
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.878
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.182
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.233
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.790
	CNS0095609	Whole white alabastrum(tetraploid) 3	83.779
	CNS0095610	Silvery flower (tetraploid) 1	61.479
	CNS0095611	Silvery flower (tetraploid) 2	52.657
	CNS0095612	Silvery flower (tetraploid) 3	50.420
	CNS0095613	Golden flower (tetraploid) 1	28.731
	CNS0095614	Golden flower (tetraploid) 2	60.216
	CNS0095615	Golden flower (tetraploid) 3	47.836
CRA001975	CRR073297	Stem 1	81.869
	CRR073298	Stem 2	79.005
	CRR073299	Stem 3	72.236
	CRR073300	Leaf 1	101.262
	CRR073301	Leaf 2	94.119
	CRR073302	Leaf 3	78.758
	CRR073303	Juvenile bud 1	104.469
	CRR073304	Juvenile bud 2	72.996
	CRR073305	Juvenile bud 3	117.197
	CRR073306	Third green 1	59.118
	CRR073307	Third green 2	43.632
	CRR073308	Third green 3	52.995
	CRR073309	Second white 1	49.379
	CRR073310	Second white 2	42.700
	CRR073311	Second white 3	49.317
	CRR073312	Silver flowering 1	54.971
	CRR073313	Silver flowering 2	52.995
	CRR073314	Silver flowering 3	49.029
	CRR073315	Gold flowering 1	17.501
	CRR073316	Gold flowering 2	27.296
	CRR073317	Gold flowering 3	24.555
	CRR073318	Tawny withering 1	68.907
	CRR073319	Tawny withering 2	44.364
	CRR073320	Tawny withering 3	71.445