Detail information of GWHGAAZE013930


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007017677.17.3717E-116SHI-related sequence 7, putative [Theobroma cacao]
Swissprottr|Q9LQZ5|SRS5_ARATH6E-80Protein SHI RELATED SEQUENCE 5
trEMBLtr|A0A061FDV1|A0A061FDV1_THECC3E-116SHI-related sequence 7, putative {ECO:0000313|EMBL:EOY14902.1}
TAIR10AT3G51060.12E-61Lateral root primordium (LRP) protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene30560823057298+
GWHAAZE00000004mRNA30560823057298+
GWHAAZE00000004exon30560823056697+
GWHAAZE00000004exon30569313057298+
GWHAAZE00000004CDS30560823056697+
GWHAAZE00000004CDS30569313057298+
Transcript Sequence

Network for GWHGAAZE013930

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05142.13DUF7021122601.60E-68
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySRS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.243
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex2.773
SRR3591709Stem0.646
SRR3591710White floral bud6.467
SRR3591711White flower5.686
SRR3591712Green floral bud5.598
SRR3591713Yellow flower1.883
SRP173429 SRR8316895Juvenile bud stage 4.465
SRR8316896Juvenile bud stage 3.972
SRR8316897Juvenile bud stage 1.755
SRR8316894Third green stage 1.759
SRR8316900Third green stage 5.450
SRR8316901Third green stage 5.380
SRR8316898Complete white stage 0.723
SRR8316899Complete white stage 2.352
SRR8316903Complete white stage 1.000
SRR8316902Silver flowering stage0.099
SRR8316904Silver flowering stage0.745
SRR8316905Silver flowering stage0.173
SRR8316906Gold flowering stage 0.252
SRR8316907Gold flowering stage 0.526
SRR8316908Gold flowering stage 0.439
SRP132670SRR6706286Control6.943
SRR6706287Light intensity 50%7.499
SRR6706288Light intensity 20%8.835
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.821
CNS0095593Slightly white alabastrum(diploid) 27.886
CNS0095594Slightly white alabastrum(diploid) 34.764
CNS0095595Whole white alabastrum(diploid) 24.170
CNS0095596Whole white alabastrum(diploid) 35.761
CNS0095597Whole white alabastrum(diploid) 45.922
CNS0095598Silvery flower (diploied) 14.698
CNS0095599Silvery flower (diploied) 23.664
CNS0095600Silvery flower (diploied) 32.319
CNS0095601Golden flower (diploid) 12.628
CNS0095602Golden flower (diploid) 23.205
CNS0095603Golden flower (diploid) 32.184
CNS0095604Slightly white alabastrum(tetraploid) 17.410
CNS0095605Slightly white alabastrum(tetraploid) 24.285
CNS0095606Slightly white alabastrum(tetraploid) 39.016
CNS0095607Whole white alabastrum(tetraploid) 13.670
CNS0095608Whole white alabastrum(tetraploid) 25.798
CNS0095609Whole white alabastrum(tetraploid) 36.729
CNS0095610Silvery flower (tetraploid) 15.579
CNS0095611Silvery flower (tetraploid) 22.357
CNS0095612Silvery flower (tetraploid) 33.068
CNS0095613Golden flower (tetraploid) 12.169
CNS0095614Golden flower (tetraploid) 211.006
CNS0095615Golden flower (tetraploid) 31.671
CRA001975CRR073297Stem 13.924
CRR073298Stem 22.469
CRR073299Stem 34.347
CRR073300Leaf 12.844
CRR073301Leaf 23.405
CRR073302Leaf 33.388
CRR073303Juvenile bud 12.466
CRR073304Juvenile bud 23.360
CRR073305Juvenile bud 31.673
CRR073306Third green 11.152
CRR073307Third green 21.627
CRR073308Third green 32.035
CRR073309Second white 10.005
CRR073310Second white 20.161
CRR073311Second white 30.016
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.712
CRR073320Tawny withering 30.108