Gene detail

Detail information of GWHGAAZE013945

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010275528.1	2.5009E-157	PREDICTED: cytokinin dehydrogenase 5-like isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q67YU0\|CKX5_ARATH	3E-99	Cytokinin dehydrogenase 5 (Precursor)
trEMBL	tr\|B9R807\|B9R807_RICCO	2E-124	Gulonolactone oxidase, putative {ECO:0000313\|EMBL:EEF52637.1}
TAIR10	AT1G75450.1	1E-83	cytokinin oxidase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3345382	3349806	+
GWHAAZE00000004	mRNA	3345382	3349806	+
GWHAAZE00000004	exon	3345382	3345976	+
GWHAAZE00000004	exon	3346437	3346564	+
GWHAAZE00000004	exon	3348974	3349168	+
GWHAAZE00000004	exon	3349741	3349806	+
GWHAAZE00000004	CDS	3345382	3345976	+
GWHAAZE00000004	CDS	3346437	3346564	+
GWHAAZE00000004	CDS	3348974	3349168	+
GWHAAZE00000004	CDS	3349741	3349806	+

Transcript Sequence
>GWHTAAZE013959 CCAGACCAGACCAGAATGGCTACTATTAAACTTGTTTTAATGTTTTTGATATGTCGTCTAATTTTGACCGTCGGATTGACCCTGGACCCCACCGAGGTTTTCTCCGCTGGAATCGACGGTCAACTCATTAGCGTTGACCCGTTACATTTAGAAACCGCTTCTATCGACTTTGGCGGGATGAAACGGGTTGATCCGTTAGCTGTTTTTAACCCGACTTCCGCCGAGGACATAGCTCGGCTGGTTCAAACCGCTTACGAATCGGCTCATGGATTCACGGTCTCGGCTAGAGGCCATGGCCATTCCATCAACGGACAGGCTCAGACGACAAATGGCGTGGTCGTACAAATGAGCGGGACTCGTCTCCGATCGGCTGAGCCAAGAGTTTCTAAGAAGTTGATGTACGTGGACGTGTGGGGTGGAGAGCTATGGATCGATGTGTTGAAGTCCACTCTAGAATATGGACTCGCACCGAAATCATGGACCGACTACTTGTACCTTTCCGTGGGTGGTACCCTCTCTAATGCCGGAGTTAGCGGTCAAGCTTTCAATCATGGCCCTCAGATTAGCAATGTACATGAGCTCGAAGTTGTCACTGGCAAGGGAGAGCTGCTGACGTGTTCAGAGGAACAAAATTCAGAATTATTCCACGCTGTTCTTGGTGGTCTAGGGCAATTTGGGATTATCACTAGGGCTAGGATTGCACTTGAAACCGCCCCTCAAAGGCAAGTAGACGATCTATTGGAGAAGCTAAAGTATATACCAGCATCGGTTTTCACTACTGACCTGCCTTACGTGGACTTCTTGGACCGGGTTCACAAGGCCGAGTTGAAGCTCCGGTCCAAGGGTTTGTGGGACGTGCCACACCCATGGCTCAACCTCTTTGTACCAAAATCAAGGATTGATGAGTTTGACAAAGGGGTGGGAAGAAAAGACTTCGGCGGTGACACCAAACGAGGAAGTGTTTTACCTGGTAGCGCTACTTAG

Network for GWHGAAZE013945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	65	207	3.80E-22
PF09265.11	Cytokin-bind	240	313	1.80E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00279	CKX	Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009690	biological_process	cytokinin metabolic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0003824	molecular_function	catalytic activity
GO:0019139	molecular_function	cytokinin dehydrogenase activity
GO:0071949	molecular_function	FAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.198
	SRR3591706	second leaf	36.858
	SRR3591707	mature leaf	57.174
	SRR3591708	Shoot apex	6.378
	SRR3591709	Stem	3.873
	SRR3591710	White floral bud	6.964
	SRR3591711	White flower	44.099
	SRR3591712	Green floral bud	6.157
	SRR3591713	Yellow flower	12.617
SRP173429	SRR8316895	Juvenile bud stage	3.378
	SRR8316896	Juvenile bud stage	3.060
	SRR8316897	Juvenile bud stage	1.655
	SRR8316894	Third green stage	0.907
	SRR8316900	Third green stage	3.737
	SRR8316901	Third green stage	4.470
	SRR8316898	Complete white stage	0.385
	SRR8316899	Complete white stage	0.594
	SRR8316903	Complete white stage	0.487
	SRR8316902	Silver flowering stage	13.356
	SRR8316904	Silver flowering stage	4.430
	SRR8316905	Silver flowering stage	0.296
	SRR8316906	Gold flowering stage	2.255
	SRR8316907	Gold flowering stage	6.445
	SRR8316908	Gold flowering stage	9.702
SRP132670	SRR6706286	Control	3.572
	SRR6706287	Light intensity 50%	4.694
	SRR6706288	Light intensity 20%	4.367
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.714
	CNS0095593	Slightly white alabastrum(diploid) 2	1.408
	CNS0095594	Slightly white alabastrum(diploid) 3	2.189
	CNS0095595	Whole white alabastrum(diploid) 2	8.254
	CNS0095596	Whole white alabastrum(diploid) 3	7.342
	CNS0095597	Whole white alabastrum(diploid) 4	9.976
	CNS0095598	Silvery flower (diploied) 1	0.587
	CNS0095599	Silvery flower (diploied) 2	1.335
	CNS0095600	Silvery flower (diploied) 3	11.086
	CNS0095601	Golden flower (diploid) 1	0.238
	CNS0095602	Golden flower (diploid) 2	2.572
	CNS0095603	Golden flower (diploid) 3	3.548
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.279
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.390
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.042
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.232
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.294
	CNS0095610	Silvery flower (tetraploid) 1	30.346
	CNS0095611	Silvery flower (tetraploid) 2	5.976
	CNS0095612	Silvery flower (tetraploid) 3	5.027
	CNS0095613	Golden flower (tetraploid) 1	4.527
	CNS0095614	Golden flower (tetraploid) 2	12.504
	CNS0095615	Golden flower (tetraploid) 3	15.823
CRA001975	CRR073297	Stem 1	11.863
	CRR073298	Stem 2	6.967
	CRR073299	Stem 3	11.164
	CRR073300	Leaf 1	8.988
	CRR073301	Leaf 2	6.544
	CRR073302	Leaf 3	5.877
	CRR073303	Juvenile bud 1	6.508
	CRR073304	Juvenile bud 2	5.430
	CRR073305	Juvenile bud 3	1.096
	CRR073306	Third green 1	5.290
	CRR073307	Third green 2	6.869
	CRR073308	Third green 3	5.496
	CRR073309	Second white 1	2.008
	CRR073310	Second white 2	2.058
	CRR073311	Second white 3	0.925
	CRR073312	Silver flowering 1	1.840
	CRR073313	Silver flowering 2	2.015
	CRR073314	Silver flowering 3	1.435
	CRR073315	Gold flowering 1	4.620
	CRR073316	Gold flowering 2	11.726
	CRR073317	Gold flowering 3	5.983
	CRR073318	Tawny withering 1	2.239
	CRR073319	Tawny withering 2	2.239
	CRR073320	Tawny withering 3	2.082