Detail information of GWHGAAZE013947


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007017642.11.15954E-37Ubiquitin-conjugating enzyme family protein isoform 2 [Theobroma cacao]
Swissprottr|Q9FWT2|UBC16_ARATH6E-30Probable ubiquitin-conjugating enzyme E2 16
trEMBLtr|A0A061FDS1|A0A061FDS1_THECC4E-38Ubiquitin-conjugating enzyme family protein isoform 2 {ECO:0000313|EMBL:EOY14867.1}
TAIR10AT1G75440.13E-24ubiquitin-conjugating enzyme 16

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene33599163360850+
GWHAAZE00000004mRNA33599163360850+
GWHAAZE00000004exon33599163360022+
GWHAAZE00000004exon33601453360185+
GWHAAZE00000004exon33603303360457+
GWHAAZE00000004exon33607553360850+
GWHAAZE00000004CDS33599163360022+
GWHAAZE00000004CDS33601453360185+
GWHAAZE00000004CDS33603303360457+
GWHAAZE00000004CDS33607553360850+
Transcript Sequence

Network for GWHGAAZE013947

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con621163.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10688UBE2W, UBC16 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.818
SRR3591706second leaf26.130
SRR3591707mature leaf50.077
SRR3591708Shoot apex25.747
SRR3591709Stem70.466
SRR3591710White floral bud49.976
SRR3591711White flower61.535
SRR3591712Green floral bud55.465
SRR3591713Yellow flower65.833
SRP173429 SRR8316895Juvenile bud stage 23.376
SRR8316896Juvenile bud stage 35.166
SRR8316897Juvenile bud stage 18.938
SRR8316894Third green stage 15.201
SRR8316900Third green stage 39.833
SRR8316901Third green stage 44.336
SRR8316898Complete white stage 28.779
SRR8316899Complete white stage 67.251
SRR8316903Complete white stage 44.372
SRR8316902Silver flowering stage42.472
SRR8316904Silver flowering stage53.842
SRR8316905Silver flowering stage27.064
SRR8316906Gold flowering stage 93.872
SRR8316907Gold flowering stage 91.134
SRR8316908Gold flowering stage 81.957
SRP132670SRR6706286Control25.510
SRR6706287Light intensity 50%27.852
SRR6706288Light intensity 20%26.902
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.785
CNS0095593Slightly white alabastrum(diploid) 235.376
CNS0095594Slightly white alabastrum(diploid) 346.538
CNS0095595Whole white alabastrum(diploid) 235.294
CNS0095596Whole white alabastrum(diploid) 339.975
CNS0095597Whole white alabastrum(diploid) 438.717
CNS0095598Silvery flower (diploied) 134.412
CNS0095599Silvery flower (diploied) 240.252
CNS0095600Silvery flower (diploied) 374.039
CNS0095601Golden flower (diploid) 151.990
CNS0095602Golden flower (diploid) 263.550
CNS0095603Golden flower (diploid) 360.940
CNS0095604Slightly white alabastrum(tetraploid) 134.759
CNS0095605Slightly white alabastrum(tetraploid) 237.645
CNS0095606Slightly white alabastrum(tetraploid) 322.221
CNS0095607Whole white alabastrum(tetraploid) 140.512
CNS0095608Whole white alabastrum(tetraploid) 241.854
CNS0095609Whole white alabastrum(tetraploid) 330.827
CNS0095610Silvery flower (tetraploid) 159.632
CNS0095611Silvery flower (tetraploid) 262.992
CNS0095612Silvery flower (tetraploid) 353.441
CNS0095613Golden flower (tetraploid) 158.918
CNS0095614Golden flower (tetraploid) 259.685
CNS0095615Golden flower (tetraploid) 374.843
CRA001975CRR073297Stem 114.990
CRR073298Stem 29.659
CRR073299Stem 313.062
CRR073300Leaf 114.829
CRR073301Leaf 211.151
CRR073302Leaf 313.981
CRR073303Juvenile bud 114.580
CRR073304Juvenile bud 216.380
CRR073305Juvenile bud 314.079
CRR073306Third green 116.730
CRR073307Third green 220.634
CRR073308Third green 313.176
CRR073309Second white 132.151
CRR073310Second white 229.969
CRR073311Second white 325.677
CRR073312Silver flowering 117.575
CRR073313Silver flowering 222.062
CRR073314Silver flowering 317.917
CRR073315Gold flowering 116.610
CRR073316Gold flowering 29.172
CRR073317Gold flowering 313.644
CRR073318Tawny withering 118.646
CRR073319Tawny withering 222.658
CRR073320Tawny withering 316.011